Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq386 136 4e-27 seq456 122 9e-23 seq141 114 1e-20 seq3 96.9 4e-15 >seq386 Length=39556 Score = 136 bits (150), Expect = 4e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||||||||| || || | || | ||| ||||||||||||||||| ||||||||||| | Sbjct 11890 TTCCTCCTCTTAGACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCAC 11831 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | |||| | ||| || || || || || ||||||||||| | ||||||||| || | Sbjct 11830 TCAAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTG 11771 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || || || || || || | || || |||| ||| | Sbjct 11770 GGATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAA 11711 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 |||| || || ||||| ||||| || | || || || || ||||||||| Sbjct 11710 CGTCCAGTGTGATGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCATT 11661 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | || || | || | ||| || || ||||||||||| ||||||||||| | Sbjct 12116 CCTCCGCGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTC 12057 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || || || || || ||||| || | |||||||||||| || || Sbjct 12056 AAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGA 11997 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || ||||| || || || || || || || ||| | || || || | |||||| Sbjct 11996 ATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACA 11937 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || ||||| || ||||| || | || || || || ||||||||| Sbjct 11936 TCCAGTGTAATAGTCTTACCAGTGAGCGTCTTCACAAAGATTTGCATT 11889 Score = 105 bits (116), Expect = 7e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || || | ||| | ||| || || ||||||||||| || |||||||||| Sbjct 11434 TTCCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGC 11375 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| || || | || || || ||||||||||| | ||||||||| || | Sbjct 11374 TTAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAG 11315 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || || || ||||| ||| | ||||| || | || | Sbjct 11314 GAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGA 11255 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTG 134710 | || | || || || || ||||| |||||||| |||||||| || Sbjct 11254 CATCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 ||||||| | || || | || ||||| || ||||| ||||| ||||| |||||||||| Sbjct 11662 TTCCTCCACGAAGACGAAGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGC 11603 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| || || | || || || ||||||||||| | ||||||||| || | Sbjct 11602 TTAGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTG 11543 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || ||||| || ||||| ||| | ||||| || | || | Sbjct 11542 GGATTCCTTCCTTGTCCTGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGA 11483 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || | || || || || || || | || || || || ||||||||| Sbjct 11482 CATCCAACGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCATT 11433 >seq456 Length=31050 Score = 122 bits (134), Expect = 9e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| || ||||||||||| || ||||||||||||| | |||| | || || Sbjct 6842 CACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTC 6783 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 | || || || ||||| || | ||||||||| ||||| || || ||||| || || || Sbjct 6782 CAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTG 6723 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 || || |||||| ||| | |||||||||| ||||||||| || || ||||| || Sbjct 6722 GATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACGTCCAGGGTGATGGTCTT 6663 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTG 134710 || || | || || || ||||| || Sbjct 6662 GCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq141 Length=126064 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||||||||| | ||||| || | || || |||||||||||||| |||||||| || | Sbjct 117155 TCCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACT 117096 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || || || || | || || || ||||| || | ||| |||||||| || || Sbjct 117095 CAGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGG 117036 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || || ||||| ||| | ||||| || | || || Sbjct 117035 GATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGAC 116976 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||||| || ||||| | || || ||||| |||||||| Sbjct 116975 ATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 >seq3 Length=497493 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 |||||||| ||| || | || | ||| || |||||||||||||| |||||||| |||| Sbjct 135392 TCCTCCTCGGAGACGAAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCT 135333 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | || || | || || || ||||| || | ||| || ||||| || || Sbjct 135332 CAAGGTGCGTCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGG 135273 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || || ||||| ||| | ||||| || | || || Sbjct 135272 GATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCAATAGTGTCCGATGGCTCGAC 135213 Query 134666 GTCGAGAGTAATGGTTTTACC 134686 || ||||| ||||| ||||| Sbjct 135212 ATCAAGAGTGATGGTCTTACC 135192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505391457089480