Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq217 600 1e-166 >seq217 Length=78499 Score = 600 bits (664), Expect = 1e-166 Identities = 736/1003 (73%), Gaps = 2/1003 (0%) Strand=Plus/Plus Query 157662 CCCCGTGGAATAACTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTT 157721 || ||||| | || |||| | | ||| | || ||| ||||||| | || | |||| Sbjct 40567 CCACGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTT 40626 Query 157722 GGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACTATC-TGTTTCATCGTCGCC 157780 |||||||| | ||| | || || | ||||| ||| | ||| || ||||| || Sbjct 40627 GGTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGC-ATCATGCTTCATTACTGCA 40685 Query 157781 TTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTC 157840 || | || || || ||||||||||||||||| ||||||||||| ||||| || || || Sbjct 40686 TTTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTT 40745 Query 157841 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTC 157900 | || ||||| ||||||||| | || | || | ||| || ||||||||||| | Sbjct 40746 CTTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATG 40805 Query 157901 CACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCT 157960 |||||||||||| | |||||||| || || | ||||| ||| |||| ||||| || || Sbjct 40806 CACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCC 40865 Query 157961 TTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGG 158020 | |||| | || || | |||||||| |||| | | | || ||||| ||||||||| Sbjct 40866 TACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGG 40925 Query 158021 GAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTC 158080 ||||| || || || | || ||||| || ||||| | ||| |||| || || || || Sbjct 40926 GAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTT 40985 Query 158081 GCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCT 158140 || || || | || || ||||| ||| || | || ||||| |||||| |||| Sbjct 40986 GCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGC 41045 Query 158141 ATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAAC 158200 ||||||||||||||| || || || |||| |||| | || ||||| || || |||||| Sbjct 41046 ATGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAAC 41105 Query 158201 ATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTC 158260 ||||||||||||||| | |||||| ||| ||||| || || ||||| |||||| | ||| Sbjct 41106 ATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTC 41165 Query 158261 TCTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAG 158320 || || ||||| || ||| ||||||||||| | | |||||||| || |||| || Sbjct 41166 TCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAA 41225 Query 158321 TCACAGAACTACGGTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCC 158380 || || |||| || ||||| || || ||||| || ||||||||||| || || || Sbjct 41226 TCCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCT 41285 Query 158381 CATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTG 158440 || || ||||| || ||| | |||||||||||||| || ||||||||||| ||| | | Sbjct 41286 CACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTT 41345 Query 158441 CACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA 158500 ||||||||| | ||| |||||||| | || ||||||| ||||||| | || || || Sbjct 41346 CACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCC 41405 Query 158501 ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGT 158560 |||||||| |||||||| ||||| ||||||||||||||| | || | || |||| Sbjct 41406 ACCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGA 41465 Query 158561 CGTGTGTTGAACACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATG 158620 ||||| | ||||||||||| || || | ||||| || | |||||| ||||| || ||| Sbjct 41466 CGTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATG 41525 Query 158621 CATGAGCGTAACGCACACAACTTCCCACTGGATCTTGCTGCTG 158663 || || ||||| || || ||||| || || ||| | ||| ||| Sbjct 41526 CACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573016128082800