Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq217 607 9e-169 >seq217 Length=78499 Score = 607 bits (672), Expect = 9e-169 Identities = 738/1002 (74%), Gaps = 6/1002 (1%) Strand=Plus/Plus Query 159949 CGTGGGAATCTTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGT 160008 |||||||| |||| | | ||| | || ||| | |||||||| || ||||||||| Sbjct 40570 CGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGT 40629 Query 160009 TCGGCGTAC--TGATGATTCCAACTCTGTTGGCAGCAACCATC-TGTTTCATCGTCGCCT 160065 ||| |||| | ||| | |||||||| | || || | |||| || ||||| || | Sbjct 40630 TCG--GTACTATCATGTTCCCAACTCTTCTTGCCGC-AGCATCATGCTTCATTACTGCAT 40686 Query 160066 TCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCA 160125 | | || || || ||||||||||| ||||| ||||| ||||| || || || || || Sbjct 40687 TTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTC 40746 Query 160126 TGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTC 160185 | || ||||| ||||||||| | || | || | || |||| ||||||||| || | | Sbjct 40747 TTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGC 40806 Query 160186 ACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 160245 ||||||| ||| | |||||||| || || | || || ||| |||| ||||| || || | Sbjct 40807 ACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCT 40866 Query 160246 TCCAACTCGTAGTATTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGG 160305 |||| | || || | ||||||||| |||| | | | || ||||| |||||||||| Sbjct 40867 ACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGG 40926 Query 160306 AACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCG 160365 ||||||| || || | || ||||| || ||||| | ||| |||| || || || || | Sbjct 40927 AACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTG 40986 Query 160366 CTGCAGCATCTGCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTA 160425 | || || | ||||| |||||| || || | || ||||| |||||| |||| | Sbjct 40987 CAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCA 41046 Query 160426 TGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATA 160485 |||||||||||||| || || || |||| |||| | || ||||| || || ||||| | Sbjct 41047 TGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACA 41106 Query 160486 TCCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCT 160545 |||||||||| ||| | || ||| ||| ||||| || || ||||| ||||||||||||| Sbjct 41107 TCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCT 41166 Query 160546 CTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGT 160605 | || |||||||| ||| ||||||||||| | | |||||||| || |||| || | Sbjct 41167 CCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAAT 41226 Query 160606 CACAGAACTACGGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCC 160665 | || |||| || ||||| || || || || || ||||||||||| ||||| || | Sbjct 41227 CCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTC 41286 Query 160666 ATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTC 160725 | || ||||| || ||| | ||||||||||| || || ||||||||||| ||| | |||| Sbjct 41287 ACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTC 41346 Query 160726 ACTTCTTCCTGGCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCA 160785 |||||||| | || ||||||||| | || ||||||| ||| || | ||||| || Sbjct 41347 ACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCA 41406 Query 160786 CCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTC 160845 ||||||| |||||||||||||| ||||||||||||||| | || |||| | || | Sbjct 41407 CCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGAC 41466 Query 160846 GTGTACTGAACACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGC 160905 |||| | ||||||||||| ||| || | || ||||| | |||||| ||||| || |||| Sbjct 41467 GTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGC 41526 Query 160906 ATGAGCGTAACGCACACAACTTCCCACTCGACCTCGCTGCTG 160947 | || ||||| || || ||||| || || || | ||| ||| Sbjct 41527 ACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559496313813800