Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq217 623 2e-173 >seq217 Length=78499 Score = 623 bits (690), Expect = 2e-173 Identities = 725/977 (74%), Gaps = 4/977 (0%) Strand=Plus/Plus Query 174476 CTGGGTCACATCAACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCC 174535 |||| ||||| ||| |||| || |||||| |||||||||||||| | | ||| | || Sbjct 40589 CTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTCGGTACTATCATGTTCCC 40648 Query 174536 TACATTGTTAGCCGCAACTGTATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGA 174595 || | | |||||| | ||| ||||||| || || | | || || || ||||| Sbjct 40649 AACTCTTCTTGCCGCAGCATCATGCTTCATTACTGCATTTATTGCCGCACCTCCTGTGGA 40708 Query 174596 CATCGACGGAATCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTC 174655 ||| ||||||||||| ||||| || || || || || | || || || ||||||||| | Sbjct 40709 CATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTACGGTAATAACATCATCAC 40768 Query 174656 TGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGC 174715 || | || | ||| || ||||||||||| | ||||||||||| | |||||||| Sbjct 40769 CGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTTCTACCCCGTTTGGGAAGC 40828 Query 174716 AGCCACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTT 174775 ||| | | ||||||||| | |||||||| || || | |||| | ||||| | ||||| Sbjct 40829 TGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCAATTGGTTGTGATGCACTT 40888 Query 174776 CCTTATTG--GTATCTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGT 174833 |||| | | || || || || ||||| |||||||||||||| || ||||| | || Sbjct 40889 CCTTCTCGGAGTTGCTTCG--TACATGGGCCGTGAGTGGGAACTTTCGTATCGCCTCGGA 40946 Query 174834 ATGAGACCTTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTC 174893 ||| | |||||||| | ||| |||| ||| ||||| |||||||| || | || || ||| Sbjct 40947 ATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGCCGCCACCGCTGTCTTC 41006 Query 174894 CTAGTCTATCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGA 174953 || ||| || | || ||||| |||||||| | ||||| | |||||| ||| Sbjct 41007 CTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCCTCTTGGTATCAGCGGA 41066 Query 174954 ACATTCAACTACATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCAC 175013 || ||||||| ||||||||||||||| || || || |||||| | |||||||| | || Sbjct 41067 ACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCTTATGCACCCGCTTCAT 41126 Query 175014 ATGTTGGGAGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTT 175073 ||| ||||| |||||||||||||| || || |||||||| || ||||| || || ||| Sbjct 41127 ATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGCCATGCACGGGTCTCTT 41186 Query 175074 GTTACCTCTTCACTTGTCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAG 175133 ||||| || || | ||||||| || || |||| || || || | || |||||| Sbjct 41187 GTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCACCAATAACGGATACAAG 41246 Query 175134 TTCGGCCAAGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTG 175193 || ||||| ||||| || ||||| ||||| || || || || || ||||| || ||| | Sbjct 41247 TTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGGGTACTTTGGACGTCTC 41306 Query 175194 ATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGG 175253 |||||||||||||| || ||||||||||| || | || |||||||||||||| ||| Sbjct 41307 ATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTTCTTCTTAGCTCTCTGG 41366 Query 175254 CCAGTTGTGGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAAT 175313 || || |||||||||||| |||||| | ||||| ||||| ||||| ||||||||||| Sbjct 41367 CCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCATGGCCTTCAACCTCAAC 41426 Query 175314 GGTTTCAACTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCG 175373 || ||||||||||||||| |||| |||||| | || | || | ||||||||||| Sbjct 41427 GGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACGTGTCATCAACACCTGGGCC 41486 Query 175374 GATGTTCTTAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAAC 175433 || | | ||| | || | |||||| ||||| || ||||| || | ||||| || ||| Sbjct 41487 GACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACGAACGTAATGCTCATAAC 41546 Query 175434 TTCCCACTAGATTTGGC 175450 || || || |||||||| Sbjct 41547 TTTCCTCTTGATTTGGC 41563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729919572592120