Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq217 607 9e-169 >seq217 Length=78499 Score = 607 bits (672), Expect = 9e-169 Identities = 738/1002 (74%), Gaps = 6/1002 (1%) Strand=Plus/Plus Query 158368 CGTGGGAATCTTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGT 158427 |||||||| |||| | | ||| | || ||| | |||||||| || ||||||||| Sbjct 40570 CGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGT 40629 Query 158428 TCGGCGTAC--TGATGATTCCAACTCTGTTGGCAGCAACCATC-TGTTTCATCGTCGCCT 158484 ||| |||| | ||| | |||||||| | || || | |||| || ||||| || | Sbjct 40630 TCG--GTACTATCATGTTCCCAACTCTTCTTGCCGC-AGCATCATGCTTCATTACTGCAT 40686 Query 158485 TCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCA 158544 | | || || || ||||||||||| ||||| ||||| ||||| || || || || || Sbjct 40687 TTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTC 40746 Query 158545 TGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTC 158604 | || ||||| ||||||||| | || | || | || |||| ||||||||| || | | Sbjct 40747 TTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGC 40806 Query 158605 ACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 158664 ||||||| ||| | |||||||| || || | || || ||| |||| ||||| || || | Sbjct 40807 ACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCT 40866 Query 158665 TCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGG 158724 |||| | || || | ||||||||| |||| | | | || ||||| ||||| |||| Sbjct 40867 ACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGG 40926 Query 158725 AACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCG 158784 ||||||| || ||| | || ||||| || ||||| | ||| |||| || ||||| || | Sbjct 40927 AACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTG 40986 Query 158785 CTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTA 158844 | || || | ||||| |||||| ||| || | || ||||| |||||| |||| | Sbjct 40987 CAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCA 41046 Query 158845 TGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACA 158904 |||||||||||||| || || || |||| |||| | || ||||| || || ||||||| Sbjct 41047 TGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACA 41106 Query 158905 TCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCT 158964 |||||||||||||| | |||||| ||| ||||| || || ||||| |||||| | |||| Sbjct 41107 TCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCT 41166 Query 158965 CTGCTATGCATGGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGT 159024 | || ||||| || ||| ||||||||||| | | |||||||| || |||| || | Sbjct 41167 CCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAAT 41226 Query 159025 CACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCC 159084 | || | || |||||||| || || ||||| ||||| || || || ||||| || | Sbjct 41227 CCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTC 41286 Query 159085 ATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGC 159144 | || ||||| || ||| | |||||||||||||| || ||||||||||| ||| | | | Sbjct 41287 ACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTC 41346 Query 159145 ACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAA 159204 |||||||| | ||| |||||||| | || ||||||| ||||||| | || || || | Sbjct 41347 ACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCA 41406 Query 159205 CCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTC 159264 ||||||| |||||||| ||||| ||||||||||||||| | || | || |||| | Sbjct 41407 CCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGAC 41466 Query 159265 GTGTGTTGAACACCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGC 159324 |||| | ||||||||||| || || | |||||||| | ||| || ||||| || |||| Sbjct 41467 GTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGC 41526 Query 159325 ATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTG 159366 | || ||||| || || ||||| || || || | ||| ||| Sbjct 41527 ACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552466010393920