Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq217 605 3e-168 >seq217 Length=78499 Score = 605 bits (670), Expect = 3e-168 Identities = 737/1003 (73%), Gaps = 2/1003 (0%) Strand=Plus/Plus Query 178847 CCTCGTGGGAACAGTTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTT 178906 || |||||||| | |||| | | ||| | || |||| |||| || | || | |||| Sbjct 40567 CCACGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTT 40626 Query 178907 GGTTCGGTGTGCTGATGATTCCTACGTTGCTTGCTGCAACTATC-TGTTTCATCGTTGCT 178965 |||||||| | ||| | || || | ||||| ||| | ||| || ||||| ||| Sbjct 40627 GGTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGC-ATCATGCTTCATTACTGCA 40685 Query 178966 TTCGTAGCAGCACCTCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTC 179025 || | || |||||||| || || |||||||| ||||| ||||| || || || || || Sbjct 40686 TTTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTT 40745 Query 179026 ATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTA 179085 | || || || ||||||||| | || |||| |||| || |||||||| || | Sbjct 40746 CTTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATG 40805 Query 179086 CACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCT 179145 |||||||||||| | |||||||| || || | || || ||| |||| ||||| || || Sbjct 40806 CACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCC 40865 Query 179146 TTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGG 179205 | |||| |||| || | ||||||||| |||| | | | || ||||| ||||||||| Sbjct 40866 TACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGG 40925 Query 179206 GAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTC 179265 |||||||| || || || || |||||||| ||||| | |||||||| ||| ||||| || Sbjct 40926 GAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTT 40985 Query 179266 GCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCT 179325 || || || | || || |||||| ||| || | || ||||| |||||| |||| Sbjct 40986 GCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGC 41045 Query 179326 ATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAAC 179385 ||||||||||||||| || || || |||| |||| | || ||||| || || |||||| Sbjct 41046 ATGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAAC 41105 Query 179386 ATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTC 179445 ||||||||||||||| | |||||| ||| ||||| || || ||||| |||||| | ||| Sbjct 41106 ATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTC 41165 Query 179446 TCTGCTATGCACGGAAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACAGAG 179505 || || |||||||| ||| ||||||||||| | | |||||||| || || | || Sbjct 41166 TCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAA 41225 Query 179506 TCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCA 179565 || || | || || ||||| || || ||||| || ||||| ||||| ||||| || Sbjct 41226 TCCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCT 41285 Query 179566 CATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTG 179625 || || ||||| || ||| | ||||||||||| || || || |||||||| || || | Sbjct 41286 CACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTT 41345 Query 179626 CACTTCTTCCTTGCTGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCA 179685 ||||||||| | ||| ||||| || | || ||||||| ||| || | || || || Sbjct 41346 CACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCC 41405 Query 179686 ACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGA 179745 |||||||| |||||||||||||| ||||||||||||||| | || | ||| | ||| Sbjct 41406 ACCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGA 41465 Query 179746 CGTGTCCTTAACACATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATG 179805 |||||| | ||||| ||||| ||| || | |||||||| | | | || ||||| || ||| Sbjct 41466 CGTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATG 41525 Query 179806 CATGAGCGTAACGCACACAACTTCCCACTCGACCTTGCTGCTG 179848 || || ||||| || || ||||| || || || | ||| ||| Sbjct 41526 CACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610321215597120