Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3 161 1e-34 seq108 131 2e-25 >seq3 Length=497493 Score = 161 bits (178), Expect = 1e-34 Identities = 490/753 (65%), Gaps = 6/753 (1%) Strand=Plus/Minus Query 69279 TGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAG 69338 ||| ||||| || || || ||||| | | | |||||| || || ||||| ||||| Sbjct 139838 TGCAAGATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAG 139779 Query 69339 ATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTT 69398 |||||| |||| || || || | ||| | || ||||| |||| ||| ||| ||||| Sbjct 139778 ATTACTGCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCATTAGCGGCATCCTT 139719 Query 69399 GTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACGAC 69458 || || || | ||||| || ||||| || || ||||| | ||| | ||| || | Sbjct 139718 ATATAGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCAGAATTGCGGACCATACCTC 139659 Query 69459 CCTAGCATTTATTA--CGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGT 69516 | ||| || || | | | ||||| ||||| |||| | |||||| Sbjct 139658 TCGGGCAGGCATCTGGCGAACATATTTTCCTTCT--TTTTCGTATTTTTCATATAGTTCC 139601 Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || || || | ||| | || | ||||| |||| || |||||||||| | Sbjct 139600 TCAAAYTCTTTTCCGCTGCACTCTGGGAGGCCAGGGCATTGATCGGGACACATCAGACTC 139541 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAG 69636 || ||||| | || |||||||||||||| | ||| || ||||| || | ||| Sbjct 139540 CAGTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATAGGCCGTAAAAT 139481 Query 69637 AGATCTCTGGTTCTATTTTCTTCATTTCCTGT-AttttttttAAGATCGAGAAACTCCAT 69695 ||||||| | || | |||||| ||||| || || ||||| |||| |||| || | Sbjct 139480 AGATCTCGAGCTCGCTGTTCTTC-TTTCCCGTGGTTCTTTTTCAGATTAAGAACGTCGAA 139422 Query 69696 AATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCC 69755 ||| || |||||||| ||||| | || | || | | || || || || ||||| Sbjct 139421 AATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCACCTCC 139362 Query 69756 CTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGA 69815 ||||| | |||||| || || || || || | ||||| |||| | ||||| || Sbjct 139361 TTGATCAACGTATCTCGCTGTCACATCGTAAACGCGAAGCATAGGAACCAGTCCATTGGA 139302 Query 69816 TTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACC 69875 |||| ||| || || | || || || |||||||| | | || Sbjct 139301 AGTACCTCGTGTACCCTTGATGGGAGACCCCCTAGCTCGAATATTGTGCACGCTCAATCC 139242 Query 69876 TATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTC 69935 ||||| || || ||| || || | ||| || || || ||||| |||||||| ||| Sbjct 139241 AATTCCACCAGCAGATTTGGATATGACAGCGCATCGCTTTAATGTATCATATATGCCCGA 139182 Query 69936 TATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCC 69995 || ||| || |||| | || | ||||| || || | ||| |||| | ||||| Sbjct 139181 AATTGAATCGTCACTCATTTGAACCAAGAAACAACTCGATAGCTGAGGATGAGTCGTTCC 139122 Query 69996 CGCATTAAATAATGTAGGAGATGCGTGAGTGAA 70028 | || ||||| |||||||||||| || || || Sbjct 139121 AGAATGAAATAGTGTAGGAGATGCATGGGTAAA 139089 >seq108 Length=147947 Score = 131 bits (144), Expect = 2e-25 Identities = 412/634 (65%), Gaps = 4/634 (1%) Strand=Plus/Minus Query 69562 GGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATC 69621 ||||||||||| | ||| | | |||| || |||| ||| || || || || ||| Sbjct 12999 GGACACATCAACGTCCATGTCCCGTTGGCCTTGACACGTTCCATGAACAGGTCAGGGATC 12940 Query 69622 CAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGA 69681 || |||| ||| | ||| | | | || |||| || || ||||| |||| Sbjct 12939 CAGAGAGAGTAAAACAAATCACGTGCGCGATCGGCTTCGTTCCCGTGGTTTTTGCGAAGA 12880 Query 69682 TCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGT 69741 || | ||| | | ||||| | ||||| || || | || || || ||| |||| Sbjct 12879 TCTAAAAAGGCAAAGATATCTGCGTGCCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTG 12820 Query 69742 CGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGA 69801 || || ||| |||||||| | ||||| ||| ||||| || |||| | || ||| || Sbjct 12819 CGCTTGCCTCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAAGACACGCAACATGGGG 12760 Query 69802 ATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTA 69861 | || ||||| ||| |||| || |||||| ||| || | || || ||||| || Sbjct 12759 ACGATGCCATTGGATGTACCGTTGGTTCCACGAATGTAGGATTTACTGGCACGAATGTTG 12700 Query 69862 CTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTG 69921 | | ||||| ||||| ||||| || || || | || || | || | |||| Sbjct 12699 TGGGTTGCCAGACCAATTCCACCTGCGTACTTCGAAATCACGGCGCAGCTCTTGAGTGTG 12640 Query 69922 TCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGA 69981 || || || || || ||| || || |||| | | |||||||| ||||| ||| Sbjct 12639 TCGTAGATGCCATCGATGGAGTCTTCCTTCATTGTCAACAGAAAACAAGAGGACATCTGA 12580 Query 69982 TGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAA 70041 | | | ||||| || || || | || || | || || ||||| || ||| || Sbjct 12579 GGGTTGTTGGTTCCGGCGTTGAAGAGGGTCGGTGTGGCATGGGTGAAGTATCGTTCCGAG 12520 Query 70042 AGCAGATTGTATGTTTC-AATAGCTGATTCTATATCC-CACTGATGAATTCCTATCGCGA 70099 || || || || || || | | | | | ||||| | | | |||||||| | |||| Sbjct 12519 AGGCCTTTATAGGTCTCCAAGACCCGCT-CGATATCATCTCCG-TGAATTCCAACGGCGA 12462 Query 70100 CACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATG 70159 | ||||||||||| ||| ||||||||| | | || ||| | || | || ||| | Sbjct 12461 CGCGCATCAACATGCACTGTGGTCGTTCTGCGATCTTGCCATTGAGCTTRAGCAAGTAGG 12402 Query 70160 ATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA 70193 | || || || |||||||| ||||| || | ||| Sbjct 12401 ACTTCTCGAGGGTTTTAAAACCAAAGTAATCGTA 12368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686899363590360