Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq386 116 3e-21 seq3 102 7e-17 seq456 98.7 8e-16 seq141 89.7 4e-13 >seq386 Length=39556 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | || | ||||| || | ||||| || ||||| || |||||||| ||| Sbjct 12116 CCTCCGCGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTC 12057 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| ||||||| || || || || || | || |||||||| ||||| || || Sbjct 12056 AAGGTGCGGCCGTCTTCCAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGA 11997 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| | |||| | | || | || || | | ||| || Sbjct 11996 ATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACA 11937 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| || || || || || ||||||||||||||||| Sbjct 11936 TCCAGTGTAATAGTCTTACCAGTGAGCGTCTTCACAAAGATTTGCAT 11890 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||| || || ||||| || |||||||| |||| | |||| ||||||| Sbjct 11870 ACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTCC 11811 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || || || |||| | | ||| ||||| || || | || || || || | Sbjct 11810 AGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTGTCCTGG 11751 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| | |||| | | || | || || | | |||||| || || || || | || Sbjct 11750 ATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAACGTCCAGTGTGATGGTCTTA 11691 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||||||||||||||| Sbjct 11690 CCAGTGAGTGTCTTCACAAAGATTTGCAT 11662 >seq3 Length=497493 Score = 102 bits (112), Expect = 7e-17 Identities = 129/174 (74%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 131645 TCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTT 131704 || ||||| |||||||||||||| || | ||||| |||| || ||||||| |||| Sbjct 139525 TCTACTCGTTTCATAAACAAATCAGGGATCCATAGGCCGTAAAATAGATCTCGAGCTCGC 139466 Query 131705 TTCTCTTCTGTACCCATAAtt-tttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCA 131763 | |||||| | ||| | || ||||||| ||| | || ||| |||||||||| |||||| Sbjct 139465 TGTTCTTCTTT-CCCGTGGTTCTTTTTCAGATTAAGAACGTCGAAAATGTCCGAATGCCA 139407 Query 131764 GGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAAC 131814 |||||| | || || || | ||| || ||||| ||| ||||||| ||| Sbjct 139406 GGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCACCTCCTTGATCAAC 139353 >seq456 Length=31050 Score = 98.7 bits (108), Expect = 8e-16 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| ||||| || | ||||| || | || || || || || || |||||||||||| Sbjct 6859 CCTCCCCGCAAGCGAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 6800 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || | || || ||||| | ||||||||||| || || || || Sbjct 6799 AGGGTGCGGCCATCCTCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 6740 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| |||| | | | || | ||||| | | ||| || Sbjct 6739 ATTCCTTCCTTGTCCTGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACG 6680 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTG 27244 || || || || | ||||| ||||| || || ||||| || || Sbjct 6679 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq141 Length=126064 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| |||| |||||||| | || || || ||||| || ||||| || ||| Sbjct 117154 CCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTC 117095 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || || | || || ||||| | || ||||| || |||||||| || Sbjct 117094 AGAGTTCGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGG 117035 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | || || || || ||||||| | || | | | || | ||||| | ||||| | || Sbjct 117034 ATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCT-CGAC 116976 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | || || || || || || || ||||||||||| Sbjct 116975 ATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424928708402088