Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq108 154 2e-32 seq39 107 2e-18 >seq108 Length=147947 Score = 154 bits (170), Expect = 2e-32 Identities = 588/911 (65%), Gaps = 19/911 (2%) Strand=Plus/Minus Query 111251 TTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAA 111310 |||||||| || || || || | ||||||| | ||| || ||||||| ||| ||| Sbjct 13275 TTGCAAACGGCAGTTTCCTCTGGAGAAGTGTACTGAACAATCTCGGTACATAGGTTCGAA 13216 Query 111311 CTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGC 111370 | ||| || ||||| || | ||| || ||| |||||||| ||||||||| | | Sbjct 13215 CAACGAATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGTTGCAGTGATCCTTGTACACC 13156 Query 111371 ATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGC 111429 ||||| || || || || || ||| || | | || || ||| | | | ||| | Sbjct 13155 ATGTAAGGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTGCGAACCAGAGCTGCTGCGCC 13096 Query 111430 TGGTACAATGGCGTTGGC---CCGTCCCTCCGC-CTCGTACTTTGTGTAGAGGGCTTCAA 111485 || ||| | ||||| || | ||| | |||||||||| ||| | | | | Sbjct 13095 TG----AATTGT-TTGGCGACCCTTGCCTTCTTTCTCGTACTTTTCGTACAATTCCTTGA 13041 Query 111486 ACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATT 111545 |||| | || |||| |||||| || || ||| ||||| | | | |||| Sbjct 13040 ACTCYTGTCCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGGACACATCAACGTCCAT- 12982 Query 111546 GACCACCTT--CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAG 111603 | || | || ||| || || | |||||| ||||| || ||||| || || |||| | Sbjct 12981 GTCC-CGTTGGCCTTGACACGTTCCATGAACAGGTCAGGGATCCAGAGAGAGTAAAACAA 12923 Query 111604 ATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGAT 111663 ||| | ||| | |||||| || ||||| || | || | || | | ||| Sbjct 12922 ATCACGTGCGCGATCGGCTTCGTTCCCGTGGTTTTTGCGAAGATCTAAAAAGGCAAAGAT 12863 Query 111664 ATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGCTTG 111720 ||| |||||||| ||||| | || | || || |||||| || ||| || | || Sbjct 12862 ATCTGCGTGCCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCGCTTGCCTCCACCCTG 12803 Query 111721 ATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTG 111780 || || || | || ||| ||| || || || | ||| || | || |||| ||| Sbjct 12802 ATCGACGTATCKGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTGGATGT 12743 Query 111781 ACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAAT 111840 ||| || || || ||||| |||||| |||| | | | ||| | || ||||| Sbjct 12742 ACCGTTGGTTCCACGAATGTAGGATTTACTGGCACGAATGTTGTGGGTTGCCAGACCAAT 12683 Query 111841 ACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 111900 || || || |||| || || || || | | || || | ||||| || | ||| Sbjct 12682 TCCACCTGCGTACTTCGAAATCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCATCGAT 12623 Query 111901 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTG-TACCAG 111959 ||||| ||||| | | | || || ||| ||||||||| || ||| || | || | Sbjct 12622 GGAGTCTTCCTTCATTGTCAACAGAAAACAAGAGGACATCTGAGGG-TTGTTGGTTCCGG 12564 Query 111960 CATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATGTCT 112019 | ||||||||||| ||||| || || |||| | || || | | || |||| Sbjct 12563 CGTTGAAGAGGGTCGGTGTGGCATGGGTGAAGTATCGTTCCGAGAGGCCTTTATAGGTCT 12504 Query 112020 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACT 112079 ||||||| || || || || ||||| || || | ||||| ||||| |||||| ||| Sbjct 12503 CCAAGACCCGCTCGATATCATCTCCGTGAATTCCAACGGCGACGCGCATCAACATGCACT 12444 Query 112080 GTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATAGCTCTTCTCAAGGGTTTTGA 112139 |||| ||| || |||||| |||| | | ||| |||||| |||||||| | Sbjct 12443 GTGGTCGTTCTGCGATCTTGCCATTGAGCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAA 12384 Query 112140 GACCAAAGTAA 112150 |||||||||| Sbjct 12383 AACCAAAGTAA 12373 >seq39 Length=234218 Score = 107 bits (118), Expect = 2e-18 Identities = 279/421 (66%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 11429 GGAAGACCCACTTGGATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGG 11488 ||||| |||| || ||| |||||||| || || || || | ||| || | ||| | Sbjct 140086 GGAAGGTCCACGGTGACCTTMCGATCAAATCGTCCGGGACGCAAGAGAGCTTGATCCAAA 140145 Query 11489 ATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCC 11548 || || || || || || || |||||| | || || | | || || |||||| Sbjct 140146 ATGTCGACACGGTTGGTAGCAGCAATAGTGATGATACCGGGATTTCCATCGAATCCATCC 140205 Query 11549 ATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTT--GCTGGCATACCAC 11606 ||||| | | |||||| | || ||||| | ||||| ||| || |||| ||| Sbjct 140206 ATCTCCACCAAAATTTGATTCACGGTCTGTTCACGTTCATCGTTTCCGCCGGCAAACC-- 140263 Query 11607 CAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGAT 11666 |||| | ||||| || || ||||| |||||||| || |||| ||| || || | Sbjct 140264 CAGCGCCACGTTGACGTCCAACAGCATCGATCTCATCGATAAAGATAATGCACGGAGCRT 140323 Query 11667 TTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCT 11726 | | || | |||||| ||||||||| | |||||| |||||||||||||||| Sbjct 140324 TCTTCTTTGCTTGTCCAAAGATATCGCGAACACGGGAGGCACCTACACCAACAAACATCT 140383 Query 11727 CCACAAAGTTTGCGGCA-GAGCACTG--GATGAATGGGACATTTGATTCACCCGCGATGG 11783 ||||||| | ||| | | | || |||||| |||||| | ||| || || | | Sbjct 140384 CCACAAACT---CGGAACCACTAATGGAGATGAAGGGGACACCAGCTTCTCCAGCAACTG 140440 Query 11784 CTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGA 11843 || || | || ||||| || ||||| || || | |||| | | |||||||| | Sbjct 140441 CTTTAGCCAAAAGAGTCTTACCAGTACCGGGAGGTCCATCCAGAATGACACCTCGGGGAA 140500 Query 11844 T 11844 | Sbjct 140501 T 140501 Score = 102 bits (112), Expect = 1e-16 Identities = 252/380 (66%), Gaps = 16/380 (4%) Strand=Plus/Minus Query 11443 GATCTTGCGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATT 11502 || ||| ||||| |||||||| || ||||| | || | ||| |||||||| | ||||| Sbjct 143384 GACCTTTCGATCGAAACGACCAGGTCGAAGCAAAGCTTGATCRAGGATATCGATACGATT 143325 Query 11503 AGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAA 11562 ||||| ||||| | ||| || | | | |||||| ||||||||||| || | Sbjct 143324 GGTGGCGGCAATGGTAATAATTCCKGGGTTACCGTCAAAACCATCCATCTCAACAAGGAT 143265 Query 11563 TTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATAC--CACCAGCACTGCGTTGC 11620 || |||||||||||||| | || ||||| || | | | ||| | | ||||| Sbjct 143264 CTGGTTAATTGTTTGTTCACGTTCGTCATTACCT--CCTCCTTGGCCACCTCCACGTTGG 143207 Query 11621 TTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 11680 || || |||||||| ||||| ||||||| ||| || || || | ||| | Sbjct 143206 CGACCGACGGCATCAATTTCATCGATGAAGATAATGCAAGGGGCGTTCTTCTTGGCTTGT 143147 Query 11681 TCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCG 11740 | || | ||| || || | ||| || ||||| || |||||||| || || | Sbjct 143146 CCGAAAATATCACGGACTCGAGAGGCTCCAACACCGACGAACATCTCAACGAATT----- 143092 Query 11741 GCAG-AGCACTG-----GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGG 11794 ||| | ||||| |||||| || ||| | || || || | || ||||||| Sbjct 143091 -CAGAACCACTGATGGAGATGAACGGAACACCCGCCTCTCCAGCAACAGCCTTGGCGAGG 143033 Query 11795 AGGGTCTTTCCCGTACCTGG 11814 |||||||| || || || || Sbjct 143032 AGGGTCTTACCGGTTCCAGG 143013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628023372410400