Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq108 167 3e-36 seq39 111 2e-19 >seq108 Length=147947 Score = 167 bits (184), Expect = 3e-36 Identities = 570/880 (65%), Gaps = 11/880 (1%) Strand=Plus/Minus Query 118751 AGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 118810 |||||||| | ||| || || || | ||| |||| |||||| |||||||| | ||| Sbjct 13249 AGTGTACTGAACAATCTCGGTACATAGGTTCGAACAACGAATGGTTCCCAAGTTTTGTTG 13190 Query 118811 ATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTG 118870 ||| ||||| |||| || ||||||||| | |||||| || || || || || || Sbjct 13189 ATTCGACTTGTTGTTGCAGTGATCCTTGTACACCATGTAAGGGGTTCCTGTTTCGACCTG 13130 Query 118871 GGACTTGAGAATAGCCTTCCAGACAT-CGGCAGCTGGCACAGT--GGCGTTGGCTCGCCC 118927 || | | || || ||||| | | || ||| | || |||| || ||| Sbjct 13129 CGAGTCCAAGATTGCGAACCAGAGCTGCTGCGCCTGA-ATTGTTTGGCGACC-CTTGCCT 13072 Query 118928 CTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCC 118987 |||| |||||||||| ||| | | | ||||| | || | || | ||| || Sbjct 13071 -TCTTTCTCGTACTTTTCGTACAATTCCTTGAACTCYTGTCCGTGGCAATCGGGGAGACC 13013 Query 118988 TGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 119047 || || || || || | | | |||| || ||| || || | |||||| Sbjct 13012 GGGGCACTCGTCGGGACACATCAACGTCCATGTCCCGTTGGCCTTGACACGTTCCATGAA 12953 Query 119048 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 119107 ||||| ||||||||||| | | || | ||| || |||| | |||| | ||| || Sbjct 12952 CAGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGCGCGATCGGCTTCGTTCCCGTG 12893 Query 119108 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 119167 || || | || |||||| | | |||||| |||||||| || |||| ||| | || Sbjct 12892 GTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTGCCAGGGCTCCAAGTAAATGGC 12833 Query 119168 GATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATAC 119224 || ||||| || | ||| |||| | || || | || ||| ||| || || Sbjct 12832 AATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAAGAC 12773 Query 119225 ACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATT 119284 ||| | ||| || | ||| |||| |||| || || || || ||||| || ||| | Sbjct 12772 ACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGTTCCACGAATGTAGGATTTACT 12713 Query 119285 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCA 119344 ||| | | | |||| | || |||||| || ||||| |||| || || ||||| Sbjct 12712 GGCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGCGTACTTCGAAATCACGGCGCA 12653 Query 119345 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 119404 | |||| || ||||||| |||||||| ||||| |||| ||| | || || || Sbjct 12652 GCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTCCTTCATTGTCAACAGAAAACA 12593 Query 119405 GCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAA 119464 ||||| ||||| || || || ||||||||||| || ||||| || ||| |||| Sbjct 12592 AGAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAGGGTCGGTGTGGCATGGGTGAA 12533 Query 119465 CATACCTTGGGACATCTTGTCGTAGGTCTCCAAGA-CGGCGGGAATGTCTTCCCCGTGAA 119523 | || || | | ||||||||||||| | || | || || || ||||||| Sbjct 12532 GTATCGTTCCGAGAGGCCTTTATAGGTCTCCAAGACCCGCTCG-ATATCATCTCCGTGAA 12474 Query 119524 TACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCC 119583 | || | | ||| ||||| |||||| | || ||| ||| | | |||| |||| Sbjct 12473 TTCCAACGGCGACGCGCATCAACATGCACTGTGGTCGTTCTGCGATCTTGCCATTGAGCT 12414 Query 119584 TCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 119623 | | | ||| |||||| | ||| || | |||||| || Sbjct 12413 TRAGCAAGTAGGACTTCTCGAGGGTTTTAAAACCAAAGTA 12374 >seq39 Length=234218 Score = 111 bits (122), Expect = 2e-19 Identities = 323/496 (65%), Gaps = 16/496 (3%) Strand=Plus/Plus Query 14042 GGTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGG 14101 || ||| |||||||| ||| |||||||| || || || || | ||| || | || | Sbjct 140086 GGAAGGTCCACGGTGACCTTMCGATCAAATCGTCCGGGACGCAAGAGAGCTTGATCCAAA 140145 Query 14102 ATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCC 14161 || || | ||||| || || || || | ||| || | | ||| || |||||| Sbjct 140146 ATGTCGACACGGTTGGTAGCAGCAATAGTGATGATACCGGGATTTCCATCGAATCCATCC 140205 Query 14162 ATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAGGCATACCAC 14219 ||||| ||| | |||||| | ||| ||||| |||||||| || ||| |||| ||| Sbjct 140206 ATCTCCACCAAAATTTGATTCACGGTCTGTTCACGTTCATCGTTTCCGCCGGCAAACC-- 140263 Query 14220 CCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGAT 14279 | || | ||||| || || || || || |||||||| || | || || || | Sbjct 140264 CAGCGCCACGTTGACGTCCAACAGCATCGATCTCATCGATAAAGATAATGCACGGAGCRT 140323 Query 14280 TTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCT 14339 | | || | |||||||||| || || | |||||| ||||| |||||||||| Sbjct 140324 TCTTCTTTGCTTGTCCAAAGATATCGCGAACACGGGAGGCACCTACACCAACAAACATCT 140383 Query 14340 CCACAAAATTGGCGGCGGAAC----ATTG--GATGAAGGGGACGTTAGATTCACCCGCGA 14393 ||||||| | |||||| | || |||||||||||| || ||| || || | Sbjct 140384 CCACAAACT------CGGAACCACTAATGGAGATGAAGGGGACACCAGCTTCTCCAGCAA 140437 Query 14394 TGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTG 14453 ||| || | || ||||| || || || || || | |||| | |||| || | Sbjct 140438 CTGCTTTAGCCAAAAGAGTCTTACCAGTACCGGGAGGTCCATCCAGAATGACACCTCGGG 140497 Query 14454 GGATCCTGGCACCACTGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTT 14513 | || | | ||| || ||| ||| |||||||| | ||| || || | || Sbjct 140498 GAATTCGGCAACCGTTGTTGGTGTACGCTTCCGGTTGTTTCAAGAAATCAACAACCTCGC 140557 Query 14514 CCAATTCATCCTTCGC 14529 ||||||| ||| || Sbjct 140558 ACAATTCAAGCTTGGC 140573 Score = 105 bits (116), Expect = 8e-18 Identities = 326/498 (65%), Gaps = 26/498 (5%) Strand=Plus/Minus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 || |||| ||| ||||| || ||||| || || || | || | || |||||||| || Sbjct 143389 ACAGTGACCTTTCGATCGAAACGACCAGGTCGAAGCAAAGCTTGATCRAGGATATCGATA 143330 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCA 14167 || || || || || ||| || || || | |||| ||||| |||||||||||| Sbjct 143329 CGATTGGTGGCGGCAATGGTAATAATTCCKGG---GTTACCGTCAAAACCATCCATCTCA 143273 Query 14168 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAGGCAT-ACCACCCGCA 14224 | || || || || |||||||| ||||| ||||| | | | | ||||| || Sbjct 143272 ACAAGGATCTGGTTAATTGTTTGTTCACGTTCGTCATTACCTCCTCCTTGGCCACCTCCA 143213 Query 14225 CTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCA 14284 ||||| ||||||||| ||||||||||||||||| | || || || || | Sbjct 143212 ---CGTTGGCGACCGACGGCATCAATTTCATCGATGAAGATAATGCAAGGGGCGTTCTTC 143156 Query 14285 CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACA 14344 ||| | | || ||||| || |||| ||| || ||||| || |||||||| || Sbjct 143155 TTGGCTTGTCCGAAAATATCACGGACTCGAGAGGCTCCAACACCGACGAACATCTCAACG 143096 Query 14345 AAATTGGCGGCGGAA-CATTG-----GATGAAGGGGACGTTAGATTCACCCGCGATGGCT 14398 || | | ||| || || |||||| || || | || || || | || Sbjct 143095 AATT------CAGAACCACTGATGGAGATGAACGGAACACCCGCCTCTCCAGCAACAGCC 143042 Query 14399 CGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATC 14458 ||||||||||||||| || || || || || | || | ||||||| ||||| Sbjct 143041 TTGGCGAGGAGGGTCTTACCGGTTCCAGGAGGTCCGTCAAGGATAACACCACGGGGGATA 142982 Query 14459 CTGGCA-CCACTGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAA 14517 | |||| || | |||| ||||||||| || | || || |||| || |||| Sbjct 142981 C-GGCAGCCGTTCTTGGTGTAGGCTTCAGGTTGCTTCAARAAATCGACGACCTCAGCCAA 142923 Query 14518 TTCATCCTTCGCGGCGTC 14535 |||| ||| || |||| Sbjct 142922 TTCAAGCTTTGCTCCGTC 142905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618426704246440