Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq39 161 1e-34 seq110 129 7e-25 seq108 120 4e-22 seq137 95.1 1e-14 >seq39 Length=234218 Score = 161 bits (178), Expect = 1e-34 Identities = 285/412 (69%), Gaps = 20/412 (5%) Strand=Plus/Plus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 || ||| |||||||| || || ||||| | ||| || | ||| | || || || || || Sbjct 140100 GACCTTMCGATCAAATCGTCCGGGACGCAAGAGAGCTTGATCCAAAATGTCGACACGGTT 140159 Query 9577 CGTCGCGGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || || || || | ||||| | |||| ||| || ||||||||||| |||| Sbjct 140160 GGTAGCAGCAATAGTGATGATACCGGGATTTCC--ATCGAATCCATCCATCTCCACCAAA 140217 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTT 9692 | ||| || | || ||||| |||||||| || ||| |||| ||| |||| | |||| Sbjct 140218 ATTTGATTCACGGTCTGTTCACGTTCATCGTTTCCGCCGGCAAACC--CAGCGCCACGTT 140275 Query 9693 GCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGA 9752 | ||| || ||||| |||||||| || |||| ||||| || || | || Sbjct 140276 GACGTCCAACAGCATCGATCTCATCGATAAAGATAATGCACGGAGCRTTCTTCTTTGCTT 140335 Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 | |||||| ||| || ||||| ||| || ||||||||||||||||||||||| | Sbjct 140336 GTCCAAAGATATCGCGAACACGGGAGGCACCTACACCAACAAACATCTCCACAAACT--- 140392 Query 9813 CGGCGGAAC----ATTG--GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9866 |||||| | || ||||||||||||| || ||| || |||| ||| || | Sbjct 140393 ---CGGAACCACTAATGGAGATGAAGGGGACACCAGCTTCTCCAGCAACTGCTTTAGCCA 140449 Query 9867 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918 |||||||||||| ||||| || || | || | | ||||||| ||||| Sbjct 140450 AAAGAGTCTTACCAGTACCGGGAGGTCCATCCAGAATGACACCTCGGGGAAT 140501 Score = 114 bits (126), Expect = 2e-20 Identities = 265/395 (67%), Gaps = 18/395 (5%) Strand=Plus/Minus Query 9503 GGGAGAGCTACTTGGATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGG 9562 |||||| | || || ||| ||||| || ||||| || ||||| | || | ||| ||| Sbjct 143398 GGGAGATCGACAGTGACCTTTCGATCGAAACGACCAGGTCGAAGCAAAGCTTGATCRAGG 143339 Query 9563 ATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCC 9622 ||||| | ||||| || ||||| ||| || ||| || | | | |||||||||||| Sbjct 143338 ATATCGATACGATTGGTGGCGGCAATGGTAATAATTCCKGGGTTACCGTCAAAACCATCC 143279 Query 9623 ATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATAC--CAC 9680 ||||| | | |||||||| |||||||| ||||| ||||| || | | | | Sbjct 143278 ATCTCAACAAGGATCTGGTTAATTGTTTGTTCACGTTCGTCATTACCT--CCTCCTTGGC 143221 Query 9681 CAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC-ATGGTTGA 9739 || | | ||||| || ||||||||||| ||||| ||||||| |||| | || | Sbjct 143220 CACCTCCACGTTGGCGACCGACGGCATCAATTTCATCGATGAAGATAATGCAAGGGGCGT 143161 Query 9740 TTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATC 9799 | ||| | || | | || | ||| || || || ||| || ||||| || |||||| Sbjct 143160 TCTTCTTG-GCTTGTCCGAAAATATCACGGACTCGAGAGGCTCCAACACCGACGAACATC 143102 Query 9800 TCCACAAAGTTTGCGGCGGAA-CATTG-----GATGAAGGGGACATTAGATTCACCCGCA 9853 || || || | | ||| || || |||||| || ||| | || || ||| Sbjct 143101 TCAACGAATT------CAGAACCACTGATGGAGATGAACGGAACACCCGCCTCTCCAGCA 143048 Query 9854 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || |||||| || |||||||| || || || Sbjct 143047 ACAGCCTTGGCGAGGAGGGTCTTACCGGTTCCAGG 143013 >seq110 Length=137954 Score = 129 bits (142), Expect = 7e-25 Identities = 126/160 (79%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTT-GCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||||| ||||| | |||| ||| |||| || ||||| ||||| ||||| || || Sbjct 11311 CTTTGCGGAGCGGTGCGTCGCCTTTTGCGTC-GTGGAGGGAATCTTTTTCTCGGGGAGCT 11369 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||||| || | ||||||||||||||| || |||||||| || || ||| ||||||| Sbjct 11370 TCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGGCCTTTTCCAACG 11429 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| ||||| || ||||||||||||||| || ||||| Sbjct 11430 AGCTCATCTCGCGCGACGAGGGACTCCACTGCGACTTTGC 11469 >seq108 Length=147947 Score = 120 bits (132), Expect = 4e-22 Identities = 454/706 (64%), Gaps = 11/706 (2%) Strand=Plus/Plus Query 104155 TTATTTTGGTCTCAAAACCCTTGAGAAGAGCTATCTTCAACGGCTCGATGGTGTCTTGAT 104214 ||| |||||| | |||||||| |||||| ||| | | |||| |||| | ||| Sbjct 12373 TTACTTTGGTTTTAAAACCCTCGAGAAGTCCTACTTGCTYAAGCTCAATGG---CAAGAT 12429 Query 104215 GGAA--ACC-CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACAT 104271 | | || ||||||| |||||| |||||||| ||| | || ||||| || || || || Sbjct 12430 CGCAGAACGACCACAGTGCATGTTGATGCGCGTCGCCGTTGGAATTCACGGAGATGATAT 12489 Query 104272 TGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACC 104331 || ||||||||||| || | | || || | |||| || || ||||| Sbjct 12490 CGAGCGGGTCTTGGAGACCTATAAAGGCCTCTCGGAACGATACTTCACCCATGCCACACC 12549 Query 104332 AACCCTCTTCAATGCTGGTA-CACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCA 104390 ||||||||||| || || | || ||| || || |||||| ||| || || | | | Sbjct 12550 GACCCTCTTCAACGCCGGAACCAACAA-CCCTCAGATGTCCTCTTGTTTTCTGTTGACAA 12608 Query 104391 ACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAA 104450 ||||| ||||| ||| | || ||||| | || || | | || || || || | Sbjct 12609 TGAAGGAAGACTCCATCGATGGCATCTACGACACACTCAAGAGCTGCGCCGTGATTTCGA 12668 Query 104451 AGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTC 104510 ||| || || || ||||| || | ||| | | | |||| |||||| |||| Sbjct 12669 AGTACGCAGGTGGAATTGGTCTGGCAACCCACAACATTCGTGCCAGTAAATCCTACATTC 12728 Query 104511 GGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 104570 | || || || ||| ||| |||| || | || ||| | || || || ||| ||| | Sbjct 12729 GTGGAACCAACGGTACATCCAATGGCATCGTCCCCATGTTGCGTGTCTTCAACAACACCG 12788 Query 104571 CGCGCTATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGC 104627 | | || || |||| | || ||| || |||||| || || | || | |||| Sbjct 12789 CCMGATACGTCGATCAGGGTGGAGGCAAGCGCAAGGGAAGCATTGCCATTTACTTGGAGC 12848 Query 104628 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687 | |||||||| |||||| | | || | || | || ||||| || |||| | | Sbjct 12849 CCTGGCACGCAGATATCTTTGCCTTTTTAGATCTTCGCAAAAACCACGGGAACGAAGCCG 12908 Query 104688 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747 || || ||| | || | | |||||||||| || || || |||||| | | || Sbjct 12909 ATCGCGCACGTGATTTGTTTTACTCTCTCTGGATCCCTGACCTGTTCATGGAACGTGTCA 12968 Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCG 104807 ||| | || | ||| | | | ||||| ||| || || |||||| ||||| | Sbjct 12969 AGGCCAACGGGACATGGACGTTGATGTGTCCCGACGAGTGCCCCGGTCTCCCCGATTGCC 13028 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG 104853 || | ||||| | | | ||| |||||||||| ||||||| Sbjct 13029 ACGGACARGAGTTCAAGGAATTGTACGAAAAGTACGAGAAAGAAGG 13074 >seq137 Length=130264 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||| ||||| ||||| ||||| || || | || || || || |||||||| || | Sbjct 127205 ACGGTCAAATCGACCGGGACGCGTTAGGGCTTGGTCCAGAATGTCCACGCGATTTGTGCC 127146 Query 9583 GGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTT 9642 ||| | |||||||| ||| ||| |||| || |||||||||||| | | ||| || Sbjct 127145 GGCCAAGACAACAACACCACTTTTTGTATCGAATCCATCCATCTCTACTAGCATTTGATT 127086 Query 9643 AATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCAC 9702 | ||| | ||| |||||||| || || | || ||| | ||||| || || Sbjct 127085 TAGAGTGTTTTCACGTTCATCGTTTCCTCCAACCCCGCCACGCCCACGTTGGCGACCAAC 127026 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC 9744 ||||| |||||||| ||||||| ||||| ||| ||| || Sbjct 127025 AGCATCTATCTCATCGATGAAGATAATGCACGGTGAATTCTC 126984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583252787454760