Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq108 208 8e-49 seq110 168 7e-37 >seq108 Length=147947 Score = 208 bits (230), Expect = 8e-49 Identities = 428/628 (68%), Gaps = 26/628 (4%) Strand=Plus/Minus Query 79287 GTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCA 79346 |||||| || ||||| | | || | | |||||| || || |||||||||| || || Sbjct 13054 GTACAATTCCTTGAACTCYTGTCCGTGGCAATCGGGGAGACCGGGGCACTCGTCGGGACA 12995 Query 79347 CATCAGGTGCCA-GTCC--TCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCA 79403 ||||| ||| |||| | | |||| || | | |||||||| ||||| |||||||| Sbjct 12994 CATCAACGTCCATGTCCCGTTGGCCTTGACA--CGT-TCCATGAACAGGTCAGGGATCCA 12938 Query 79404 CAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCT-CGTCGCCCTGGTTCAGACGCAGCT 79462 || | || | || || || ||| || ||| || ||||| || || | Sbjct 12937 GAGAGAGTAAAACAAATCACGTGCGCG-ATCGGCTTCGTTCCCGTGGTTTTTGCGAAGAT 12879 Query 79463 CGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGC 79522 | | |||| | | ||| || |||||||| ||||||| || ||||| | ||||||| Sbjct 12878 CTAAAAAGGCAAAGATATCTGCGTGCCAGGGCTCCAAGTAAATGGCAATGCTTCCCTTGC 12819 Query 79523 GCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCA 79582 ||||||| || ||||| | |||||| | ||| ||||||||||| || || | |||||| | Sbjct 12818 GCTTGCCTCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAAGACACGCAACATGGGGA 12759 Query 79583 CGATGCCGTCGGCGACGCCGTTCGTCCCGTTGAT-TCG--TGTACCGCTCGCCCGAATGT 79639 ||||||| | || ||||| || || || | | | ||| | || ||||||| Sbjct 12758 CGATGCCATTGGATGTACCGTTGGTTCCACGAATGTAGGATTTACTG---GCACGAATGT 12702 Query 79640 TCGAGCAGTGGATT------CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCT 79693 | |||| || || || || || | |||| || || ||||| || Sbjct 12701 T------GTGGGTTGCCAGACCAATTCCACCTGCGTACTTCGAAATCACGGCGCAGCTCT 12648 Query 79694 TGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCG 79753 |||| || ||||||||||| ||||| ||||| |||||||| | | ||| || || | Sbjct 12647 TGAGTGTGTCGTAGATGCCATCGATGGAGTCTTCCTTCATTGTCAACAGAAAACAAGAGG 12588 Query 79754 ACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACT 79813 ||||||| |||||||| || |||||||||||||||||||| || || || |||||| | Sbjct 12587 ACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAGGGTCGGTGTGGCATGGGTGAAGTATC 12528 Query 79814 TTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGA 79873 || | | || |||||| ||| ||| || || || ||||| || || | Sbjct 12527 GTTCCGAGAGGCCTTTATAGGTCTCCAAGACCCGCTCGATATCATCTCCGTGAATTCCAA 12468 Query 79874 CCGCGACGCGCATGAAGAGGTACTGGGG 79901 | ||||||||||| || | | |||| || Sbjct 12467 CGGCGACGCGCATCAACATGCACTGTGG 12440 Score = 167 bits (184), Expect = 3e-36 Identities = 358/528 (68%), Gaps = 10/528 (2%) Strand=Plus/Plus Query 19195 CTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAG 19254 |||||| || || || |||||||| ||||||||||| || |||||||| |||||||| Sbjct 12532 CTTCACCCATGCCACACCGACCCTCTTCAACGCCGGAACCAACAACCCTCAGATGTCCTC 12591 Query 19255 CTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGA 19314 ||||| || || | |||||||| ||| ||| || ||||||||||| || |||||| Sbjct 12592 TTGTTTTCTGTTGACAATGAAGGAAGACTCCATCGATGGCATCTACGACACACTCAAGAG 12651 Query 19315 GTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGAT-CCACTGCTCGAATATCCGGT 19373 ||||| || || |||| | || || || || | || | | || || || Sbjct 12652 CTGCGCCGTGATTTCGAAGTACGCAGGTGGAATTGGTCTGGCAACCCAC-AACATTCGTG 12710 Query 19374 CGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCC 19433 | ||| | || ||| || ||||| | || | || |||||||| ||| | | Sbjct 12711 CCAGTAAATCCTACATTCGTGGAACCAACGGTACATCCAATGGCATCGTCCCCATGTTGC 12770 Query 19434 GCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGT 19493 | |||||||||||||| ||| | |||||| | ||||| || ||||| |||||||| Sbjct 12771 GTGTCTTCAACAACACCGCCMGATACGTCGATCAGGGTGGAGGCAAGCGCAAGGGAAGCA 12830 Query 19494 TCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGA 19553 | ||||| ||| | ||||| |||||||| || || | | || | || || ||| | Sbjct 12831 TTGCCATTTACTTGGAGCCCTGGCACGCAGATATCTTTGCCTTTTTAGATCTTCGCAAAA 12890 Query 19554 ACCAGGGTGACG-AGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGAC 19612 |||| || ||| || ||| ||| || || | || | | ||||| || ||| Sbjct 12891 ACCACGGGAACGAAGCCGAT-CGCGCACGTGATTTGTTTTACTCTCTCTGGATCCCTGAC 12949 Query 19613 CTATTCATGGAGAAGGTTGAGAAGG---ACGAAGAATGGCACCTGATGTGCCCGCACGAA 19669 || |||||||| | | || |||| ||| |||| ||||||| || |||| Sbjct 12950 CTGTTCATGGA-ACG--TGTCAAGGCCAACGGGACATGGACGTTGATGTGTCCCGACGAG 13006 Query 19670 TGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTAC 19717 ||||| || || ||||| | |||| | | |||||| || |||||| Sbjct 13007 TGCCCCGGTCTCCCCGATTGCCACGGACARGAGTTCAAGGAATTGTAC 13054 >seq110 Length=137954 Score = 168 bits (186), Expect = 7e-37 Identities = 354/514 (69%), Gaps = 13/514 (3%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| ||| || ||||| || |||| | ||| || ||||||| |||||| Sbjct 10949 TCCTTCTGGACCGCGGAAGAGATCGATCTCGGCTCGGACATGGCCGATTGGGTCAAGCTG 11008 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 || |||||| || ||||||| ||||||||||||| ||||| || || Sbjct 11009 TCCGACAACGAGCGACACTTCATCAGCCACATCCTGGCCTTCTTTGCGGCATCGGACGGG 11068 Query 59733 ATTGTGATGGAAAATATAG-ACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCG 59791 || || | ||||| | | ||| ||||||| | || ||||| |||||| || Sbjct 11069 ATCGTCAACGAAAACCTGGCACA-GAACTTTATGACCGAGCTCCAGTCGCCCGAGGGACG 11127 Query 59792 GTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCA 59850 | ||||||| | ||| ||| ||| |||||||| ||||| ||||||||| Sbjct 11128 CTGCTTCTACGGCTTCCAGATCGCGGTG-GAGAACATCCACTCGGAGACCTACTCGCTCC 11186 Query 59851 TGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGA 59910 | ||||| | || |||||||| | || |||||| |||| ||| ||||| || | Sbjct 11187 TCATCGACACGTACATCAAGGATTCCGAGGAGAAGCTCCGTCTCCTCCACGCCATCGACA 11246 Query 59911 CG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTC-CTGGA-- 59966 || ||||| || || |||| || |||||| | |||||| || | | | ||| Sbjct 11247 CGGTCCCCTGC-GTGCGGAAAAAGGCCCGCTGGGCCCTCCAGTGG-TGCGACTCGGGAAT 11304 Query 59967 -GCATCATTTGCACAACGTCTCATAGC-TTTTGCATGCGTGGAAGGAATCTTCTTCTCTG 60024 || ||||| | || | | || |||||| | |||||| |||||||| ||||| | Sbjct 11305 GGCCAGCTTTGCGGAGCGGTGCGTCGCCTTTTGCGT-CGTGGAGGGAATCTTTTTCTCGG 11363 Query 60025 GCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCT 60084 | ||||| || || || |||||||| ||||| ||||||||||| |||||| || | Sbjct 11364 GGAGCTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGCCTGGCCTTTT 11423 Query 60085 CCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||||| || || || |||||||| ||||| Sbjct 11424 CCAACGAGCTCATCTCGCGCGACGAGGGACTCCA 11457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548517264640560