Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq108 192 6e-44 seq154 104 3e-17 seq3 87.8 2e-12 >seq108 Length=147947 Score = 192 bits (212), Expect = 6e-44 Identities = 363/528 (69%), Gaps = 8/528 (2%) Strand=Plus/Plus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 ||||| || || ||||| || ||||| |||||||| || || || ||||||||||||| Sbjct 12530 TACTTCACCCATGCCACACCGACCCTCTTCAACGCCGGAACCAACAACCCTCAGATGTCC 12589 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 || || ||| || | |||||||| ||||| ||||| ||||||||||| || |||||| Sbjct 12590 TCTTGTTTTCTGTTGACAATGAAGGAAGACTCCATCGATGGCATCTACGACACACTCAAG 12649 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC-CACTGCTCGAACGTCCG 53448 || ||| || || |||| | ||||| || ||| | || | | ||| | || Sbjct 12650 AGCTGCGCCGTGATTTCGAAGTACGCAGGTGGAATTGGTCTGGCAACCCAC-AACATTCG 12708 Query 53449 TGCGAACGGCACACCAA--TCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATG 53506 ||| | | | || | | || || ||||| || |||| ||||| || ||| Sbjct 12709 TGCCA--GTAAATCCTACATTCGTGGAACCAACGGTACATCCAATGGCATCGTCCCCATG 12766 Query 53507 CTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGG 53566 | || |||||||||||||| ||| | |||||| | |||||||| || ||||||||||| Sbjct 12767 TTGCGTGTCTTCAACAACACCGCCMGATACGTCGATCAGGGTGGAGGCAAGCGCAAGGGA 12826 Query 53567 TCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGT 53626 | ||||| ||| | ||||| |||||||| || || | | ||| | || || || Sbjct 12827 AGCATTGCCATTTACTTGGAGCCCTGGCACGCAGATATCTTTGCCTTTTTAGATCTTCGC 12886 Query 53627 CTGAATCAGGGTGACGAAG-AGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCC 53685 || || || |||||| ||| ||| ||||| ||||| |||| ||||| || Sbjct 12887 AAAAACCACGGGAACGAAGCCGAT-CGCGCACGTGATTTGTTTTACTCTCTCTGGATCCC 12945 Query 53686 GGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGA 53745 ||||| |||||| || || || ||| | ||| ||||||| || |||| Sbjct 12946 TGACCTGTTCATGGAACGTGTCAAGGCCAACGGGACATGGACGTTGATGTGTCCCGACGA 13005 Query 53746 GTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTA 53793 ||||||||| |||| | | | |||| | ||||| || || |||| Sbjct 13006 GTGCCCCGGTCTCCCCGATTGCCACGGACARGAGTTCAAGGAATTGTA 13053 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGAGTGCTGATCGTGGTGCGT 55802 ||| || |||||| ||||||| | || || | | ||| || ||| |||||| | | Sbjct 13999 GACTGTCTGGGAGGTTCCACA-ACGAATCATTCTCGACTTGGCTGCCGATCGTTCCCCCT 14057 Query 55803 ACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTTCACTGGCCAAGTTGA 55862 ||| |||| |||| |||||| | ||| | ||||||| | ||||||| Sbjct 14058 TTATCTGCCAGAGCCAGAGTCTGAATGTTCACATTGCCGATCCTTCGTCGAAGAAGTTGA 14117 Query 55863 GCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGA 55922 ||| ||||| || || | ||||||||||||||| ||||| || |||||||| || || Sbjct 14118 CCTCCATGCATTTCTATGCGTGGAAGAAGGGACTGAAGACCGGAATGTACTACCTACGAT 14177 Query 55923 CCCGCGCCAAGGCC 55936 | || |||||||| Sbjct 14178 CTCGACCCAAGGCC 14191 >seq154 Length=113200 Score = 104 bits (114), Expect = 3e-17 Identities = 132/179 (74%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 152022 CAAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCC 152081 |||||||||||| ||||| |||| ||||| |||| ||| || ||||| || || || Sbjct 49610 CAAACGCGTGAATATGTACCGGGGAGACGCCGCGTCCTCGCCCCCGGCCAGTCGGGTACC 49669 Query 152082 AAACTGTCCAG-AGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCA 152140 |||||| || | |||| || || | ||||| ||||| | ||||| || | ||| |||| Sbjct 49670 AAACTGCCCCGAAGGGGTC-AGCAAATTGAGATTGTTCGAACCCACAAAGTCCTGCGCCA 49728 Query 152141 AATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCG 152199 | || |||||||||||| || || |||||||| ||||| || || |||||| Sbjct 49729 TCCCGATGATGGTGCCCTGCAGAGAAGCCTCGCCGTGGTGGTACGCGGTGTGTTCCGCG 49787 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 119077 GAACACGTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTC 119136 ||| | |||||| |||||||| ||||| |||| || || || || | ||||| ||| | Sbjct 51881 GAAAATGTTGGCGAGCTTGGCCCCGTAGCCGTGGCGGCCCCCCGTGAGGCGCTTCTCGCC 51940 Query 119137 GTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGA 119186 ||||| | ||||||| | |||| ||||||||||||| ||||||||||| Sbjct 51941 GTCGTCGAAGTTGGACCCCGTCAGCAGGTGCCCAAAGAGGAGCTCGGGGA 51990 >seq3 Length=497493 Score = 87.8 bits (96), Expect = 2e-12 Identities = 339/523 (65%), Gaps = 10/523 (2%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||||||||||| |||||| | |||||||| || || | || || || || | Sbjct 139058 TGAGACGTACGACTATATGAGCGAGGGATACTTTACCCATGCATCTCCTACACTATTTCA 139117 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 |||| |||| ||| |||||| | ||||| || ||| |||| |||| || || || Sbjct 139118 TTCTGGAACGACTCATCCTCAGCTATCGAGTTGTTTCTTGGTTCAAATGAGTGACGATTC 139177 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || ||||| || || || | ||| || || ||| ||||| | | ||||| Sbjct 139178 AATTTCGGGCATATATGATACATTAAAGCGATGCGCTGTCATATCCAAATCTGCTGGTGG 139237 Query 53422 TATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACG 53480 || || | | ||| | || | || || | || | || |||||||| || ||| Sbjct 139238 AATTGGATTGAGCGTGCAC-AATATTCGAGCTAGGGGGTCTCCCATCAAGGGTAC--ACG 139294 Query 53481 GCGT--CGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 || || ||||| | || |||||||| ||||| | | | || || | ||||| Sbjct 139295 AGGTACTTCCAATGGACTGGTTCCTATGCTTCGCGTTTACGATGTGACAGCGAGATACGT 139354 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 | || || ||||| ||||| || | || || | ||| | || || ||||| | Sbjct 139355 TGATCAAGGAGGTGGAAAGCGGCCTGGTGCATTTGCTGTTTACATTGAACCCTGGCATTC 139414 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 |||||| | || |||| | ||| ||| || || | ||||| ||| || Sbjct 139415 GGACATTTTCGACGTTCTTAATCTGAAAAAGAACCACGGGAAAGAAGAACAGCGAGCTCG 139474 Query 53659 TGACCT-GTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACG 53717 || || ||||| || || ||||| || || | || ||| || || ||||| || | Sbjct 139475 AGATCTATTTTACGGC-CTATGGATCCCTGATTTGTTTATGAAACGAGTAGAGAACGATG 139533 Query 53718 AGGAGTGGTACCTGATGTG-CCCGAACGAGTGCCCCGGCCTCC 53759 | | ||| |||||||| ||||| | | ||||| ||||||| Sbjct 139534 AAAACTGGAGTCTGATGTGTCCCGATC-AATGCCCTGGCCTCC 139575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208482620200