Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq108 188 8e-43 seq386 187 3e-42 seq22 150 2e-31 seq141 145 9e-30 seq456 134 2e-26 seq3 114 1e-20 seq154 102 9e-17 seq134 98.7 1e-15 >seq108 Length=147947 Score = 188 bits (208), Expect = 8e-43 Identities = 511/774 (66%), Gaps = 9/774 (1%) Strand=Plus/Minus Query 80982 AATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTA 81041 ||| || |||| ||||| || || |||||| |||||| |||||||| |||||| Sbjct 13210 AATGGTTCCCAAGTTTTGTTGATTCGACTTGTTGTTGCAGTGATCCTTGTACACCATGTA 13151 Query 81042 CGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGAC 81101 ||||| || || |||||||| || | | ||| ||| ||| | || |||||| | Sbjct 13150 AGGGGTTCCTGTTTCGACCTGCGAGTCCAAGATTGCGAACCAGAGCTGCTGCGCCTGAAT 13091 Query 81102 CACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACC 81161 | ||| |||||||| | | ||||| |||| ||| | ||||| || Sbjct 13090 TGTTTGGCGACCCTTGCCTTCTTTCTCGTACTTTTCGTACAATTCCTTGAACTCYTGTCC 13031 Query 81162 GTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCA-GTCGGTGTCGT 81220 ||| || | ||| | |||||||||| || ||||||| ||| ||| || | Sbjct 13030 GTGGCAATCGGGGAGACCGGGGCACTCGTCGGGACACATCAACGTCCATGTCCC-GTTGG 12972 Query 81221 TCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGC 81280 || ||| | |||||| ||||||||||||||| | | |||| || || || Sbjct 12971 CCTTGACACGTTCCATGAACAGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGCGC 12912 Query 81281 GCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCC 81340 | | | || | || ||||| ||| | || | |||| | | ||| || || |||| Sbjct 12911 GATCGGCTTCGTTCCCGTGGTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTGCC 12852 Query 81341 ATGGCTCCAGATACACGGCGATCGACCCCTTGCGACGGCC---ACCCTGGTTGACGTAAC 81397 | ||||||| || | ||| || |||||||| ||| |||||| | |||||| | Sbjct 12851 AGGGCTCCAAGTAAATGGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTATC 12792 Query 81398 GGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTAC 81457 ||| || ||| || ||||||||||| |||| ||| |||| || |||||| || | Sbjct 12791 KGGCGGTGTTGTTGAAGACACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGTTC 12732 Query 81458 CCACGA-TACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGAC 81516 | |||| | || |||| || | ||| | ||| ||||| || ||||||| Sbjct 12731 C-ACGAATGTAGGATTTACTGGCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGCG 12673 Query 81517 CACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTT 81576 |||| |||||| || || | || | || || || || || |||||| |||| Sbjct 12672 TACTTCGAAATCACGGCGCAGCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTCC 12613 Query 81577 TTCAT-GTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAG 81635 ||||| ||||| || ||||| |||||||||||| | || | ||||| ||||| || Sbjct 12612 TTCATTGTCAA-CAGAAAACAAGAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAG 12554 Query 81636 TGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCG 81695 || || || || || |||| || || | || | | |||||| ||| ||| || Sbjct 12553 GGTCGGTGTGGCATGGGTGAAGTATCGTTCCGAGAGGCCTTTATAGGTCTCCAAGACCCG 12494 Query 81696 TGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 ||||| || |||||||| || | || || ||||| |||||| |||| || Sbjct 12493 CTCGATATCATCTCCGTGAATTCCAACGGCGACGCGCATCAACATGCACTGTGG 12440 >seq386 Length=39556 Score = 187 bits (206), Expect = 3e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| |||||||| || || ||||||||||| || || || || || Sbjct 11889 AATGCAAATCTTTGTGAAGACGCTCACTGGTAAGACTATTACACTGGATGTGGAACCATC 11948 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| || ||||| | || || ||||||||||| ||||||||||| || || Sbjct 11949 TGATACCATTGACAACGTGAAGACCAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 12008 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || |||||||| |||||||| || || | || ||| | ||||| || Sbjct 12009 GCAGCGTCTTATCTTTGCTGGAAAGCAACTGGAAGACGGCCGCACCTTGAGTGACTACAA 12068 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||| || ||||| | || | ||||||||||| || Sbjct 12069 CATCCAAAAGGAATCTACCCTTCACTTGGTTCTCCGTCTTCGCGGAGG 12116 Score = 156 bits (172), Expect = 5e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||||||||| || || || |||||||| || | || || ||| | Sbjct 11433 AATGCAAATCTTTGTCAAGACCCTCACGGGAAAGACTATCACGTTGGATGTCGAGCCTTC 11492 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| | ||| | || |||||||||||||| ||||| || || || || Sbjct 11493 GGACACTATTGACAATGTCAAGACCAAGATTCAGGACAAGGAAGGAATCCCACCTGATCA 11552 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | ||||||||||| |||||| | || |||| | |||||| ||||| || Sbjct 11553 GCAGAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAA 11612 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | | || ||||| |||||||| || || ||| | |||||||| || ||| Sbjct 11613 TATTCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGTCTTCGTGGAGGA 11661 Score = 152 bits (168), Expect = 6e-32 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| || || || ||||| || || || || ||||| | Sbjct 11661 AATGCAAATCTTTGTGAAGACACTCACTGGTAAGACCATCACACTGGACGTTGAACCGTC 11720 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||||| || ||||| | || || ||||||||||| ||||| || || || || Sbjct 11721 TGATACCATTGATAACGTGAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCTGATCA 11780 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | ||||||||||| |||||||| || || | || ||| | ||||| || Sbjct 11781 GCAGAGATTGATTTTTGCTGGAAAGCAACTGGAAGACGGCCGCACCTTGAGTGACTACAA 11840 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||||||||||||||| ||||| | ||| | ||||| Sbjct 11841 CATCCAAAAGGAATCCACGCTTCACTTGGTCCTCCGTCT 11879 Score = 145 bits (160), Expect = 9e-30 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468 || || || || || || | ||||||||||| || || | || || ||| | || Sbjct 11209 CAGATTTTCGTAAAAACTTTGACCGGCAAGACAATCACGTTGGATGTCGAGCCTTCGGAC 11268 Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 | ||||| ||| | ||| | || || ||||||||||| ||||||||||| || |||||| Sbjct 11269 ACCATTGACAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAGCAG 11328 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 | | ||||||||||| |||||| | || |||| | |||||| ||||| ||| || Sbjct 11329 AGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAATATC 11388 Query 27589 CAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||||||| |||||||| |||| | |||||||| || ||| Sbjct 11389 CAAAAGGAATCTACTCTTCACTTAGTGCTTCGTCTTCGTGGAGGA 11433 >seq22 Length=300247 Score = 150 bits (166), Expect = 2e-31 Identities = 150/192 (78%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501 || ||| | || || ||| || ||||| |||| ||| | ||| | || || || ||| Sbjct 203445 ATCACTTTGGATGTAGAGCCATCTGATACGATTGATAATGTCAAGACCAAGATCCAAGAC 203504 Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 ||||| ||||||||||| || ||||||||||| || |||||||| |||||| | |||||| Sbjct 203505 AAGGAAGGAATTCCTCCCGATCAGCAGCGTCTTATATTTGCTGGAAAGCAATTGGAGGAT 203564 Query 27562 GATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 | |||||| | ||| |||||||| |||| |||||||||||||||||| | || | || Sbjct 203565 GGTCGTACTTTGAGC-GACTATAACATCCAGAAGGAATCCACTCTTCATTTGGTGCTTCG 203623 Query 27621 TCTTCGCGGTGG 27632 |||||| || || Sbjct 203624 TCTTCGTGGAGG 203635 >seq141 Length=126064 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || ||||| ||||| || ||||| || || ||| || Sbjct 116928 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTCGATGTCGAGCCATCG 116987 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || ||||||||||| ||||| || || || ||| Sbjct 116988 GACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCGGATCAG 117047 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| || |||||| | ||||||| ||| || || || || || Sbjct 117048 CAACGTCTTATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTCTGAGTGATTACAAC 117107 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCG 27620 |||||||||||||||| || ||| | ||| |||| Sbjct 117108 ATCCAAAAGGAATCCACCCTGCATTTGGTCCTGCG 117142 >seq456 Length=31050 Score = 134 bits (148), Expect = 2e-26 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468 || || ||||| ||||| || || |||||||| || || || || || || | || Sbjct 6636 CAGATTTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGACGTGGAACCGTCCGAC 6695 Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 | ||| | || | || | || || ||||||||||| ||||||||||| ||||||||| Sbjct 6696 ACCATCGACAACGTCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAGCAG 6755 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGT 27587 ||||| || ||||| || |||||| | ||||||| || ||||| ||| ||||| || | Sbjct 6756 CGTCTCATCTTTGCCGGAAAGCAATTGGAGGATGGCCGCACCCTGAGC-GACTACAACAT 6814 Query 27588 CCAAAAGGAATCCACTCTTCA 27608 ||| ||||||||||| ||||| Sbjct 6815 CCAGAAGGAATCCACCCTTCA 6835 >seq3 Length=497493 Score = 114 bits (126), Expect = 1e-20 Identities = 148/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || ||||| || |||||||| || ||| || || | |||| || | ||| | || Sbjct 135192 GGTAAGACCATCACTCTTGATGTCGAGCCATCGGACACTATTGACAACGTCAAGACCAAG 135251 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || ||||||||||| ||||| ||||| || || || ||||| || ||||| || |||||| Sbjct 135252 ATCCAGGACAAGGAAGGAATCCCTCCTGATCAACAACGTCTTATCTTTGCCGGAAAGCAA 135311 Query 27553 CTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCT 27611 | || |||| || ||| | ||| || || || |||||||||||||||| ||||| | Sbjct 135312 TTGGAAGATGGACGCACCTTGAGC-GATTACAACATCCAAAAGGAATCCACCCTTCACTT 135370 Query 27612 AGTCTTGCGTCTTCGCGGTGGA 27633 || | ||||| || || ||| Sbjct 135371 GGTTCTTCGTCTCCGAGGAGGA 135392 >seq154 Length=113200 Score = 102 bits (112), Expect = 9e-17 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 32080 GCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTT 32139 || || || || || || |||||||||||||| || || ||||||||||| || | Sbjct 49786 GCGGAACACACCGCGTACCACCACGGCGAGGCTTCTCTGCAGGGCACCATCATCGGGATG 49727 Query 32140 GCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGG 32199 || ||| ||||||| ||| | || || || || || || || || || |||||||| Sbjct 49726 GCGCAGGACTTTGTGGGTTCGAACAATCTCAATTTGCTGACCCCTTCGGGGCAGTTTGGT 49667 Query 32200 ACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGT 32253 ||||| || ||||| ||| |||| || ||| |||| ||||| ||||| ||| Sbjct 49666 ACCCGACTGGCCGGGGGCGAGGACGCGGCGTCTCCCCGGTACATATTCACGCGT 49613 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 30368 TCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAGGAGCAGC 30427 ||||||| ||| | ||||||||||| |||| | ||||||| | |||||| ||| ||| Sbjct 51990 TCCCCGAGCTCCTCTTTGGGCACCTGCTGACGGGGTCCAACTTCGACGACGGCGAGAAGC 51931 Query 30428 GCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAACGTTTTC 30477 || | ||||| || || | |||||||| || |||||||||||| ||||| Sbjct 51930 GCCTCACGGGGGGCCGCCACGGCTACGGGGCCAAGCTCGCCAACATTTTC 51881 >seq134 Length=128537 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 64737 TGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGG 64796 ||| || ||||| || |||||||| |||||||||| |||| |||||| |||||| | || Sbjct 121695 TGTCGAGGGAATCTTTTTTTCTGGTGCATTCTGTTCCATTTACTGGCTGAAAAAGAGAGG 121636 Query 64797 CCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGGCTCCA 64853 ||| ||||| ||| | | |||||||||||||| || ||| ||||| || || || Sbjct 121635 CCTTATGCCCGGTTTAACCTTTTCGAACGAGCTAATTAGTCGAGACGAAGGACTTCA 121579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570302565360880