Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq55 250 2e-61 seq157 95.1 1e-14 >seq55 Length=197180 Score = 250 bits (276), Expect = 2e-61 Identities = 433/627 (69%), Gaps = 8/627 (1%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||||| | ||| ||| ||| ||||| ||| ||||| || |||| | |||| Sbjct 129812 TGGGAAAGGCCCGGGGGGCCCGCTCCAGCTGCTCCTTGAGCGGCTCGACGTGGTTGAGGT 129871 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 ||||||| ||||| ||||| ||||||| | ||| || || | ||||||| ||||| | Sbjct 129872 AGACGTGGGCGTCCCCCAGCGTGTGGACCAGCTCCCCGGGCTTGCGCCCGGTCACGTGGG 129931 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 ||| | || ||| ||||| | ||||||||| ||||| ||||| ||||| || ||||||| Sbjct 129932 CCACGAGGTGCGTCAGGAGCGCGTAGCTGGCAATGTTGAAGGGGACCCCCAGGCCCATGT 129991 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC------ACGTAAAACT 30071 | |||||| |||||| | || || || ||| || | || ||||| |||| Sbjct 129992 CGGCCGACCGCTGGTACATGTGGCAGCTGACCTCGTCGGTGGTCGTGTCGACGTAGAACT 130051 Query 30072 GACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGC 30131 | |||| |||||| || || || ||||| | ||| | | |||||||||||||| Sbjct 130052 GGCACAGCAGGTGGCAGGGGGGGAGGGCCATCTCGTCCAGGGCGGAGGGGTTCCAGGCGC 130111 Query 30132 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCT 30191 || || ||| || | ||| || ||||||| | |||| ||| | | | ||||| Sbjct 130112 TCATGAGGATCCGGCGGTCCTCCGGGTTGTGCTTGATCTTGTCGATGCACTCGGCCAGCT 130171 Query 30192 GATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCC 30251 | || || ||| ||| | |||||| | ||||||| ||||||| || || || |||| Sbjct 130172 GGTCGACGCCCTGCCCGGTGTAGTCGGTGTGCATGTCCTTGTACTCGGCGCCAAAGTGCC 130231 Query 30252 TCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC-CTC 30310 |||||| || ||||| || || |||||||| ||||| || | ||| || ||||| | Sbjct 130232 GCCACTGAAAGCCGTAGACGGGGCCCAGGTCGCCCTCCTCTCGGTG-TCCSAGCCCGCGG 130290 Query 30311 TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGC 30370 || | || || |||| |||| ||||||||||| | ||| || ||| Sbjct 130291 GCCTCGAGGAATTCCTTGGAGGCGTTTCCGTCCCAGATCCCGATGTTCTTTTCCTTGAGG 130350 Query 30371 TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA 30430 |||| ||| ||| || || |||||| || || ||||| |||| || |||| Sbjct 130351 AGGTTGGCGTTGGTGCTGCCGGAGATGAACCAGAGGAGTTCCTCGGCGACTCCCCTCCAG 130410 Query 30431 AAGACCCTCTTGGTCGTGAGGAGGGGA 30457 ||| |||| || || || || ||| Sbjct 130411 AAGGTTTTCTTCGTGGTCAGCAGCGGA 130437 >seq157 Length=115544 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/182 (72%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 49066 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGGGTCGCACCCAA 49125 ||||||| | ||||||||| |||| ||| ||| | | |||| ||||| ||| || | Sbjct 5193 TCTCGAGGATGAGCTGGGCGATCCGGTCCCCCTTTTGGACCTGAAAGTCCTCGGTGCCGA 5252 Query 49126 AGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 49185 ||| || || | |||||||| | |||| |||||| | ||| ||||||||||| ||| Sbjct 5253 GGTTGAAGAGGACGACGCCGACGGGCCCCCGGTAGTCCGCGTCGACCACCCCGGCCCCGC 5312 Query 49186 CGTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 49245 ||| || || || | ||| || || |||| ||| || | || | ||||| | |||| Sbjct 5313 AGTCGATCCCCTTCTTGACGGCGAGTCCCGACCGGGGGGCGATCCGGGCGTAG-GTCCCG 5371 Query 49246 GG 49247 || Sbjct 5372 GG 5373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406304957853108