Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq456 138 1e-27 seq141 120 3e-22 seq3 109 5e-19 seq386 104 2e-17 seq67 104 2e-17 >seq456 Length=31050 Score = 138 bits (152), Expect = 1e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050 ||||| |||||||| || ||||| |||||| | || || || || ||||||||||||||| Sbjct 6636 CAGATTTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGACGTGGAACCGTCCGAC 6695 Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110 | || || | |||||| || || || ||||| ||||| || || ||||| || ||| Sbjct 6696 ACCATCGACAACGTCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAGCAG 6755 Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170 ||| | || | ||||| || |||||||| || | ||| | ||| |||||||| Sbjct 6756 CGTCTCATCTTTGCCGGAAAGCAATTGGAGGATGGCCGCACCCTGAGCGACTACAACATC 6815 Query 27171 CAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| || ||| | || ||||| | || |||||||| || Sbjct 6816 CAGAAGGAATCCACCCTTCACTTGGTGCTTCGCTTGCGGGGAGG 6859 >seq141 Length=126064 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || || || || || || ||||| ||| | || ||||| || || || || | Sbjct 116926 CCATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTCGATGTCGAGCCAT 116985 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| |||| || | ||||| || || || ||||| ||||| || ||||| |||| Sbjct 116986 CGGACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCGGATC 117045 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | || ||| | || | ||||| || |||||||| || || || | ||||||| Sbjct 117046 AGCAACGTCTTATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTCTGAGTGATTACA 117105 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||| |||||||| || ||| | |||||||| |||| ||| | || || Sbjct 117106 ACATCCAAAAGGAATCCACCCTGCATTTGGTCCTGCGATTGAGAGGAGG 117154 >seq3 Length=497493 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 || ||| | || |||||||| || || || || ||| | ||||| | ||||| || Sbjct 135192 GGTAAGACCATCACTCTTGATGTCGAGCCATCGGACACTATTGACAACGTCAAGACCAAG 135251 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 || || ||||| ||||| || || || |||||||| ||| | || | ||||| || ||| Sbjct 135252 ATCCAGGACAAGGAAGGAATCCCTCCTGATCAACAACGTCTTATCTTTGCCGGAAAGCAA 135311 Query 27135 TTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTG 27194 |||||||| | ||| | |||||||||||| |||||||| || ||| | || ||| Sbjct 135312 TTGGAAGATGGACGCACCTTGAGCGATTACAACATCCAAAAGGAATCCACCCTTCACTTG 135371 Query 27195 GTTTTGCGTTTGCGGGGTGG 27214 ||| | ||| | || || || Sbjct 135372 GTTCTTCGTCTCCGAGGAGG 135391 >seq386 Length=39556 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26991 CAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGAC 27050 ||||| || ||||||||| ||||||||||| | || || | || || || || || ||| Sbjct 11209 CAGATTTTCGTAAAAACTTTGACCGGCAAGACAATCACGTTGGATGTCGAGCCTTCGGAC 11268 Query 27051 TCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAG 27110 | ||||| | ||||| || || || ||||| ||||| || || || ||||| ||| Sbjct 11269 ACCATTGACAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAGCAG 11328 Query 27111 CGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATT 27170 | || || | || || || ||||||||||| | |||| | ||| ||||| || Sbjct 11329 AGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAATATC 11388 Query 27171 CAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || | || || || | ||| | || || || || Sbjct 11389 CAAAAGGAATCTACTCTTCACTTAGTGCTTCGTCTTCGTGGAGGAAT 11435 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || || || ||| |||| || | || || || || || Sbjct 11434 ATGCAAATCTTTGTCAAGACCCTCACGGGAAAGACTATCACGTTGGATGTCGAGCCTTCG 11493 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || ||||| ||||| ||||| || ||||| ||||| Sbjct 11494 GACACTATTGACAATGTCAAGACCAAGATTCAGGACAAGGAAGGAATCCCACCTGATCAG 11553 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || || || ||||||||||| | |||| | ||| ||||| Sbjct 11554 CAGAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAAT 11613 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| |||||||| || | || |||| | ||| | || || || || Sbjct 11614 ATTCAGAAGGAGTCCACTCTGCACCTGGTCCTTCGTCTTCGTGGAGGAAT 11663 >seq67 Length=176555 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 135460 GACGCATGACCCGTTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCA 135519 ||| || ||| ||||||||||| ||||| | || | ||| || || ||||| Sbjct 90570 GACCCACGACGACTTGTGGAACGCAGCACAGCTACAAGTCGTCCGAACGGGAAAGATGCA 90629 Query 135520 CGGATTTATGCGCATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGA 135579 ||||||| |||||||||||||||| |||||||| |||||||| | | || ||||| || Sbjct 90630 CGGATTTTTGCGCATGTATTGGGCGAAAAAGATTCTGGAATGGACCTCGTCCCCTGCGGA 90689 Query 135580 GGCGCTACAACACGCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAA 135639 || | | | |||| || ||||| || | ||| |||||| ||||| ||| | || Sbjct 90690 TGCCTTGCGATACGCCCAATACTTTAACGACAAGTACGCTTTAGACGGACGGGATCCCAA 90749 Query 135640 TGGCT 135644 ||||| Sbjct 90750 TGGCT 90754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434912425308480