Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq217 612 2e-170 >seq217 Length=78499 Score = 612 bits (678), Expect = 2e-170 Identities = 737/1003 (73%), Gaps = 0/1003 (0%) Strand=Plus/Plus Query 176104 TGGGAGCAGTTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTT 176163 ||||| | || | | | ||| |||| | || ||||| | ||||| | |||||||| Sbjct 40572 TGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTC 40631 Query 176164 GGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTTTTATCGTTGCATTTATT 176223 ||| ||||| | ||| ||| || | || ||| |||| || || |||||||||| Sbjct 40632 GGTACTATCATGTTCCCAACTCTTCTTGCCGCAGCATCATGCTTCATTACTGCATTTATT 40691 Query 176224 GCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTAT 176283 || ||||| ||||| || || ||||| || |||||||| || || |||||||| || || Sbjct 40692 GCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTAC 40751 Query 176284 GGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTC 176343 || || ||||||||| | || | ||| |||| | ||||||||||| | |||||| Sbjct 40752 GGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTTC 40811 Query 176344 TACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAA 176403 ||||| | |||||||| || | | ||||||||| | ||||| |||||||| |||||| Sbjct 40812 TACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCAA 40871 Query 176404 CTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGACGCCAATGGGAACTT 176463 | ||||| | ||||||||| |||| | | | |||||||| || | ||||||||| Sbjct 40872 TTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAACTT 40931 Query 176464 AGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCA 176523 || | || || |||||||||||||| | |||||||| ||| ||||| || | || Sbjct 40932 TCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGCC 40991 Query 176524 GCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCT 176583 || | || || |||||| ||| || | || |||||| |||||| ||||| |||||| Sbjct 40992 GCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCCT 41051 Query 176584 CTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTA 176643 ||||| || || || |||||||| ||||| || ||||| || ||||||||||| || Sbjct 41052 CTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCTT 41111 Query 176644 ATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCA 176703 |||||||| | |||||| ||||| |||||||| || || |||||| | ||||| || Sbjct 41112 ATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGCC 41171 Query 176704 ATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAA 176763 |||||||| |||||||||||| || | | | || || |||||||||||||| Sbjct 41172 ATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCACC 41231 Query 176764 AACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGT 176823 || |||| ||||| || || || ||||| || || ||||||||||| || || ||||| Sbjct 41232 AATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGGG 41291 Query 176824 TACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTC 176883 |||||||| ||||| |||||||| || || || ||||| ||||| | |||||||||| Sbjct 41292 TACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTTC 41351 Query 176884 TTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATG 176943 ||| | || | || || | | ||||||| || || |||||||| | ||| ||| Sbjct 41352 TTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCATG 41411 Query 176944 GCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTG 177003 || |||||||| ||||| ||||||||||||||| ||||| | ||| | || || Sbjct 41412 GCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACGTGTC 41471 Query 177004 ATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAG 177063 || || |||| || || | |||||||| | ||||| ||||| || |||||||| Sbjct 41472 ATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACGAA 41531 Query 177064 CGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCAGAGA 177106 ||||||||||| ||||| || ||||| | ||| ||| |||| Sbjct 41532 CGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTGGCGAGA 41574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603486109495680