Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_028785.1 Length=72790 Score E Sequences producing significant alignments: (Bits) Value seq30 111 7e-20 >seq30 Length=255409 Score = 111 bits (122), Expect = 7e-20 Identities = 303/460 (66%), Gaps = 22/460 (5%) Strand=Plus/Minus Query 64253 GCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAG 64312 ||||| | || || | ||| ||||| |||| ||||| ||||| ||| || || Sbjct 77892 GCCAATTCCCTGGGCATCGACGTCGACGACCTGCTGGTGAGCCAGCCCGACTGCGGGGAA 77833 Query 64313 CAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--TCGTCGTCG 64370 |||||| || || || ||| || || ||| |||| || ||| | || |||| | Sbjct 77832 ATGGCCCTCGACATTGTCGACAAGCTGGTGCGGTC-GGCG-GCCGTCGACGTCATCGTGG 77775 Query 64371 TTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTC 64430 | ||| || || |||||||| ||||| ||||||||||| || ||||| ||| | Sbjct 77774 TGGACAGCGTCGCCGCCCTGGTCCCGCGGGCCGAGCTCGAGGGGGACATGTCCGACTCGC 77715 Query 64431 ACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCATCT 64490 | |||||||||| || || |||||||| |||| ||||| ||| ||||||| | || Sbjct 77714 AGATCGGCCTGCAGGCCCGGCTCATGTCCAAGGCGATGCGGAAGATCACCGGGTCGCTCG 77655 Query 64491 CCAGCACCAA---CACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCAACG 64547 || || ||| |||| ||| | | | |||||| ||||| ||| |||| | Sbjct 77654 CCCTCAGCAAGTGCACGGTGA---TTTTTCTGAACCAGCTGCGCTCCAAGGTCGG---GG 77601 Query 64548 TGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTACGCCTCAG 64607 | |||||| | |||| || |||| || || ||| | | ||||||| | || | Sbjct 77600 TCATCTACGGGTCCCCCGAGGTGACTTCGGGGGGGAACGCTCTCAAGTTCTACTCGTCCG 77541 Query 64608 TCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACC 64667 ||||| | || ||| || | || ||| | ||| | ||| | || Sbjct 77540 TCCGCCTCGACACCCGCCGGA---------AGGAGGTCCTCCCCGAGAACGCCGGGATCC 77490 Query 64668 GCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCC 64707 || | ||| |||||||||||||||||| |||| |||| Sbjct 77489 GCGTCAAGGTCAAGGTCGTCAAGAACAAGGTGGCGGCGCC 77450 Score = 107 bits (118), Expect = 9e-19 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 64064 CCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGG 64123 || |||||||| | | ||||||| || || ||| ||||| ||||||| ||| ||| Sbjct 78378 CCGACCGGCTCGCTGACCCTGGACGTGGCGCTCGGCGGGGGGGGATACCCGAAGGGGCGG 78319 Query 64124 GTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTG 64183 |||||||| ||||||||||| || || || |||||| | || ||| ||||||||| | Sbjct 78318 GTGGTGGAGATCTACGGCCCCGAGTCCTCCGGGAAGACGACCCTGGCCCTCCACGCGATC 78259 Query 64184 GCC-AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGA 64242 ||| | ||| |||||| || || | || |||| | ||||| |||||| |||| || Sbjct 78258 GCCGAGTGC-CAGAAGAGGGGCGGGACGGCAGCCTTTGTGGACGCCGAGCACGCCCTCGA 78200 Query 64243 CCCTGAGTACG 64253 || | |||| Sbjct 78199 TCCCGTCTACG 78189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 232800081819389