Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq30 107 9e-19 >seq30 Length=255409 Score = 107 bits (118), Expect = 9e-19 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 66659 GCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCCGATACCGGCGAG 66718 ||||| | || || | ||| ||||| |||| ||||| |||||||| ||| || Sbjct 77892 GCCAATTCCCTGGGCATCGACGTCGACGACCTGCTGGTGAGCCAGCCCGACTGCGGGGAA 77833 Query 66719 CAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCA--TCGTCGTCG 66776 |||||| || || || ||| || || ||| |||| || ||| | || |||| | Sbjct 77832 ATGGCCCTCGACATTGTCGACAAGCTGGTGCGGTC-GGCG-GCCGTCGACGTCATCGTGG 77775 Query 66777 TTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTC 66836 | ||| ||| || |||||||| ||||| ||||||||||| || ||||| ||| | Sbjct 77774 TGGACAGCGTCGCCGCCCTGGTCCCGCGGGCCGAGCTCGAGGGGGACATGTCCGACTCGC 77715 Query 66837 ACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACTGG 66888 | |||||||||| || || |||||||| |||| ||||| ||| |||| || Sbjct 77714 AGATCGGCCTGCAGGCCCGGCTCATGTCCAAGGCGATGCGGAAGATCACCGG 77663 Score = 107 bits (118), Expect = 9e-19 Identities = 140/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 66470 CCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGCCGG 66529 || |||||||| | | ||||||| || || ||| ||||| ||||||| ||| ||| Sbjct 78378 CCGACCGGCTCGCTGACCCTGGACGTGGCGCTCGGCGGGGGGGGATACCCGAAGGGGCGG 78319 Query 66530 GTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTG 66589 |||||||| ||||||||||| || || || |||||| | || ||| ||||||||| | Sbjct 78318 GTGGTGGAGATCTACGGCCCCGAGTCCTCCGGGAAGACGACCCTGGCCCTCCACGCGATC 78259 Query 66590 GCC-AATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGA 66648 ||| | ||| |||||| || || | || |||| | ||||| |||||| |||| || Sbjct 78258 GCCGAGTGC-CAGAAGAGGGGCGGGACGGCAGCCTTTGTGGACGCCGAGCACGCCCTCGA 78200 Query 66649 CCCTGAGTACG 66659 || | |||| Sbjct 78199 TCCCGTCTACG 78189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242857547107266