Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq217 459 3e-124 >seq217 Length=78499 Score = 459 bits (508), Expect = 3e-124 Identities = 671/947 (71%), Gaps = 2/947 (0%) Strand=Plus/Plus Query 189707 GGTTGGTTTGGTGTACTCATGATTCCATGCTTGCTCGCAGCAGCAGCATGCTTCGTTGTT 189766 |||||||| ||| ||||| | ||| | || || |||||| |||||||| || | Sbjct 40623 GGTTGGTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGCATCATGCTTCATTACT 40682 Query 189767 GCATTTATTGCAGCACCACCTGTAGACATTGATGGCATCAGAGAGCCAGTTGCAGGTTCA 189826 ||||||||||| ||||| ||||| |||||||| || ||| | || || ||||| || || Sbjct 40683 GCATTTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCT 40742 Query 189827 CTTCTCTATGGTAACAACATCATTTCTGGTGCTGTTGTACCTTCATCAAATGCTATTGGT 189886 ||||| || ||||| |||||||| | || |||| | ||||| | || || || || Sbjct 40743 CTTCTTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGG 40802 Query 189887 CTACACTTCTACCCAATCTGGGAAGCAGCAACAGTAGATGAGTGGCTTTACAATGGTGGT 189946 | ||||||||||| | |||||||| || | | || || ||| | ||||| || || Sbjct 40803 ATGCACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGA 40862 Query 189947 CCTTACCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAG 190006 || ||||| ||||| | | ||||||||| | || | | | |||||||| | || Sbjct 40863 CCCTACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAG 40922 Query 190007 TGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCA 190066 |||||| | || || | || || ||| | |||||||| | |||||| | || ||||| Sbjct 40923 TGGGAACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCT 40982 Query 190067 GTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCATTCTCTGAT 190126 || | || || || || ||||| ||||| |||| || || ||||| ||| Sbjct 40983 GTTGCAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGAT 41042 Query 190127 GGTATGCCTTTAGGTATCTCAGGTACATTCAACTTCATGTTTGTATTCCAAGCAGAACAT 190186 || |||||| | |||||| || || |||||||||||||| || ||||| || || || Sbjct 41043 GGCATGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCAC 41102 Query 190187 AATATCCTTATGCACCCATTCCATATGGCAGGTGTAGCAGGTATGTTTGGTGGAGCATTA 190246 || |||||||||||||| | |||||||| || || |||||| | || || ||| | || Sbjct 41103 AACATCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTG 41162 Query 190247 TTCTCTGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAAACAACTGGTTTA 190306 ||||| || ||||| || || ||||| || || ||| | ||| | ||||| || | Sbjct 41163 TTCTCCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAAC 41222 Query 190307 GAGTCACAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACATACAACATAGTAGCT 190366 || || || | || ||||||||||| || ||||| ||||| |||||||| || || Sbjct 41223 GAATCCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCC 41282 Query 190367 GCTCATGGTTACTTTGGTAGACTTATCTTCCAGTATGCTTCATTCAACAACTCAAGAAGT 190426 ||||| || |||||||| | || |||||||| || || || ||||||||||| | | Sbjct 41283 GCTCACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCT 41342 Query 190427 TTACACTTCTTCTTAGCAGTATTCCCTGTAACCTGTGTATGGTTAACATCAATGGGTATT 190486 | |||||||||||||| | | |||||| || | |||| || | |||||| | Sbjct 41343 CTTCACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTC 41402 Query 190487 TGCACAATGGCATTCAACTTAAATGGTTTCAACTTTAACCAGTCTGTAGTTGATGCACAA 190546 | ||| ||||| |||||| | || || |||||||| |||||| |||| | || | | | Sbjct 41403 TCCACCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTC-CGA 41461 Query 190547 GGTAAAATTGTTCCA-ACATGGGGCGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGT 190605 || | | || | || |||| ||| | | ||| | || | ||||| ||||| || Sbjct 41462 GGGACGTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGT 41521 Query 190606 AATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCTTGTG 190652 ||||| ||| | ||||| || ||||| || || || | |||| || Sbjct 41522 CATGCACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631418525768840