Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq55 196 4e-45 >seq55 Length=197180 Score = 196 bits (216), Expect = 4e-45 Identities = 326/469 (70%), Gaps = 8/469 (2%) Strand=Plus/Plus Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558 ||||| ||| || | ||||| | || | |||||| | |||| |||||| |||||| Sbjct 129807 GAGCTTGGGAAAGGCCCGGGGGGCCCGCTCCAGCTGCTCCTTGAGCGGCTCGACGTGGTT 129866 Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGAC 6618 ||||||| || || ||||||| ||| || ||||||||||| || ||| || Sbjct 129867 GAGGTAGACGTGGGCGTCCCCCAGCGTGTGGACCAGCTCCCCGGGCTTGCGCCCGGTCAC 129926 Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678 || || | | || ||| || || ||||| || ||||||||||| || ||||| | || Sbjct 129927 GTGGGCCACGAGGTGCGTCAGGAGCGCGTAGCTGGCAATGTTGAAGGGGACCCCCAGGCC 129986 Query 6679 CATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG------CGACGTA 6732 |||||| |||| || || || | |||||| | ||| | | | ||||||| Sbjct 129987 CATGTCGGCCGACCGCTGGTACATGTGGCAGCTGACCTCGTCGGTGGTCGTGTCGACGTA 130046 Query 6733 GAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCA 6792 ||| ||||| || |||||| |||||||| |||||| || | |||||||| Sbjct 130047 GAACTGGCACAGCAGGTGGCAGGGGGGGAGGGCCATCTCGTCCAGGGCGGAGGGGTTCCA 130106 Query 6793 CGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGAT-CACGTACT 6851 |||| ||| | ||||| | ||| || ||||| |||| | ||||||| ||| | Sbjct 130107 GGCGCTCATGAGGATCCGGCGGTCCTCCGGGTTGTGCTTGATCTTGTCGATGCAC-TCGG 130165 Query 6852 GCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAA 6911 ||||||||| | ||||| || | ||||| | | | || ||||| || |||| Sbjct 130166 CCAGCTGGTCGACGCCCTGCCCGGTGTAGTCGGTGTGCATGTCCTTGTACTCGGCGCCAA 130225 Query 6912 AGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCG 6960 |||| | |||||| || |||||||| ||||||| |||||||||||| || Sbjct 130226 AGTGCCGCCACTGAAAGCCGTAGACGGGGCCCAGGTCGCCCTCCTCTCG 130274 Score = 196 bits (216), Expect = 4e-45 Identities = 326/469 (70%), Gaps = 8/469 (2%) Strand=Plus/Minus Query 34385 CGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAG 34444 || |||||||||||| ||||||| |||||||| || |||||| | |||||||| || ||| Sbjct 130274 CGAGAGGAGGGCGACCTGGGCCCCGTCTACGGCTTTCAGTGGCGGCACTTTGGCGCCGAG 130215 Query 34445 TATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTG-AT 34503 || || | | | ||||| | || ||||| | ||||||||| | ||| || Sbjct 130214 TACAAGGACATGCACACCGACTACACCGGGCAGGGCGTCGACCAGCTGGCCGA-GTGCAT 130156 Query 34504 CGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 ||||| | |||| ||||| || ||| | ||||| | ||| |||| |||||||| Sbjct 130155 CGACAAGATCAAGCACAACCCGGAGGACCGCCGGATCCTCATGAGCGCCTGGAACCCCTC 130096 Query 34564 GGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCG---- 34619 | || |||||| |||||||| |||||| || ||||| |||||||||| Sbjct 130095 CGCCCTGGACGAGATGGCCCTCCCCCCCTGCCACCTGCTGTGCCAGTTCTACGTCGACAC 130036 Query 34620 --CGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGT 34677 | | | ||| | |||||| | || || || |||| |||||||| | ||||| Sbjct 130035 GACCACCGACGAGGTCAGCTGCCACATGTACCAGCGGTCGGCCGACATGGGCCTGGGGGT 129976 Query 34678 GCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTT 34737 || ||||||||||| || ||||| || || ||| || | | || || || ||| Sbjct 129975 CCCCTTCAACATTGCCAGCTACGCGCTCCTGACGCACCTCGTGGCCCACGTGACCGGGCG 129916 Query 34738 GGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 || ||||||||||| || ||| ||||||| || || ||||||| |||||| |||| Sbjct 129915 CAAGCCCGGGGAGCTGGTCCACACGCTGGGGGACGCCCACGTCTACCTCAACCACGTCGA 129856 Query 34798 GCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTC 34846 || |||| | |||||| | || | ||||| | || ||| ||||| Sbjct 129855 GCCGCTCAAGGAGCAGCTGGAGCGGGCCCCCCGGGCCTTTCCCAAGCTC 129807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448256241995280