Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq386 165 2e-35 seq456 161 2e-34 seq141 152 1e-31 seq3 152 1e-31 seq22 109 1e-18 >seq386 Length=39556 Score = 165 bits (182), Expect = 2e-35 Identities = 172/223 (77%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGT 210952 ||||| | || || | |||||| || || || ||||||||||| || || | ||||| | Sbjct 12110 CGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAGG-T 12052 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || |||||||| ||||| || || |||||||| || || || |||||||||| ||| Sbjct 12051 GCGGCCGTCTTCCAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCC 11992 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||||||||||||| |||||||| || ||||| ||||| ||| || || || Sbjct 11991 TTCCTTGTCCTGGATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAG 11932 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| || ||||| ||||| ||||| | |||||| Sbjct 11931 TGTAATAGTCTTACCAGTGAGCGTCTTCACAAAGATTTGCATT 11889 Score = 154 bits (170), Expect = 3e-32 Identities = 164/214 (77%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 ||||| | |||||| ||||| || ||||||||||| || || | ||||| | | || || Sbjct 11873 AGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCACTCAAGG-TGCGGCCGTC 11815 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||||| ||||| || || || || | | || || ||||| || | |||||||||||| Sbjct 11814 TTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTGTC 11755 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| |||||||| || ||||| ||||| |||||| || || ||||| || Sbjct 11754 CTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAACGTCCAGTGTGATGGT 11695 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| || ||||| ||||| ||||| | |||||| Sbjct 11694 CTTACCAGTGAGTGTCTTCACAAAGATTTGCATT 11661 Score = 147 bits (162), Expect = 5e-30 Identities = 168/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | ||||| ||||| ||||||||||| || || || || || || || Sbjct 11658 TCCACGAAGACGAAGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCTTAG 11599 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||||||||||||||||| ||||| || || || || | | || || ||||| || | Sbjct 11598 GGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGAT 11539 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||||||| ||||| || || || || || ||||| || || || || Sbjct 11538 TCCTTCCTTGTCCTGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGACATC 11479 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | ||||| |||||||||||||| ||||| ||||| | |||||| Sbjct 11478 CAACGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCATT 11433 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | ||||||||| || || |||||||| || || || || Sbjct 11430 TCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAG 11371 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||||||||||||||||| ||||| || || || || | | || || || ||||||| Sbjct 11370 GGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGAAT 11311 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||||||||||||||||||| || || || || |||||||| || || || || Sbjct 11310 TCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACATC 11251 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTG 211111 | ||||| ||||| || || | ||| ||||| || | ||| Sbjct 11250 CAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 >seq456 Length=31050 Score = 161 bits (178), Expect = 2e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| ||||| || || |||||||| || || ||||| | ||||| Sbjct 6844 AGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 6785 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || ||||| || || || ||||| ||||||| ||||||||||||| Sbjct 6784 TCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCC 6725 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| ||||| ||||||||||| || ||| || || || ||||| ||| Sbjct 6724 TGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACGTCCAGGGTGATGGTC 6665 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTG 211111 || || || || ||||||||||| | ||| Sbjct 6664 TTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq141 Length=126064 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || || ||||| || ||||||||||| ||||| || || | ||||| Sbjct 117139 AGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTCAGAGTTCGACCATCC 117080 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||| || || |||||||| ||||| || || || || | ||||||||||||| Sbjct 117079 TCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGTCC 117020 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || || ||||||||||| ||| Sbjct 117019 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGACATCGAGAGTGATGGTC 116960 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || || | ||||| Sbjct 116959 TTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 >seq3 Length=497493 Score = 152 bits (168), Expect = 1e-31 Identities = 147/186 (79%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || | |||||| ||||| || ||||||||||| ||||| | ||||| | | |||||| Sbjct 135376 AGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCTCAAGG-TGCGTCCATC 135318 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 ||||| ||||| || || |||||||| |||||||| |||||||| | |||||||||||| Sbjct 135317 TTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGGGATTCCTTCCTTGTC 135258 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| || ||||| || || ||||| || || || || |||||||| || Sbjct 135257 CTGGATCTTGGTCTTGACGTTGTCAATAGTGTCCGATGGCTCGACATCAAGAGTGATGGT 135198 Query 211082 CTTTCC 211087 ||| || Sbjct 135197 CTTACC 135192 >seq22 Length=300247 Score = 109 bits (120), Expect = 1e-18 Identities = 146/199 (73%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAA 210948 || |||||| | || || | ||||||||||| || || ||||||||||| || | ||| Sbjct 203633 TCCACGAAGACGAAGCACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAGTCGCTCAA 203574 Query 210949 GGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 | | | ||||| |||| ||||| || || || ||||| || || || || ||||||| Sbjct 203573 AG-TACGACCATCCTCCAATTGCTTTCCAGCAAATATAAGACGCTGCTGATCGGGAGGAA 203515 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 |||||||||||| |||||||| || || || || || || ||||| || || | Sbjct 203514 TTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTATCAATCGTATCAGATGGCTCTACAT 203455 Query 211069 CGAGAGTGATCGTCTTTCC 211087 | | |||||| | |||||| Sbjct 203454 CCAAAGTGATTG-CTTTCC 203437 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || || ||||| | | ||| || |||||||||| ||||||||||||||| ||| Sbjct 203444 TGCTTTCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGAATC 203385 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || || || || |||||||| || || || || | ||||| |||||||| Sbjct 203384 TTGGTCTTGACATTGTCAATGGTGTCGGAAGGCTCGACATCCAAGGTGATTGTCTTTCCG 203325 Query 211089 GTGAGAGTCTTTACAAA 211105 || | || ||||| || Sbjct 203324 GTCAATGTTTTTACGAA 203308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159135678053135