Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq141 118 7e-22 seq386 109 4e-19 seq3 109 4e-19 >seq141 Length=126064 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || |||||||| ||||| || ||||||||||| || || | || Sbjct 116928 ATGCAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTCGATGTCGAGCCATCG 116987 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || | | ||||| ||||| | || || ||||| Sbjct 116988 GACACGATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAAGGAATCCCACCGGATCA 117046 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || |||||||| || ||| |||| || | || ||| | | |||||||| Sbjct 117047 GCAACGTCTTATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTCTGAGTGATTACAA 117106 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||| || ||||| | ||||| || | | ||| |||||||| Sbjct 117107 CATCCAAAAGGAATCCACCCTGCATTTGGTCCTGCGATTGAGAGGAGGA 117155 >seq386 Length=39556 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || |||||||||||||| || ||||| | || || || | | Sbjct 11433 AATGCAAATCTTTGTCAAGACCCTCACGGGAAAGACTATCACGTTGGATGTCGAGCCTTC 11492 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||||| |||| ||| | || || || ||| ||||| ||||| | || || |||| Sbjct 11493 GGACACTATTGACAATGTCAAGAC-CAAGATTCAGGACAAGGAAGGAATCCCACCTGATC 11551 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || ||| ||||||| | | | || || |||| |||| Sbjct 11552 AGCAGAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACA 11611 Query 23789 ACATACAAAAAGAGTCCAC 23807 | || || || |||||||| Sbjct 11612 ATATTCAGAAGGAGTCCAC 11630 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || ||||| || || || ||||| || || ||||| | | Sbjct 11661 AATGCAAATCTTTGTGAAGACACTCACTGGTAAGACCATCACACTGGACGTTGAACCGTC 11720 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| || | || || || | | ||||| ||||| | || || |||| Sbjct 11721 TGATACCATTGATAACGTGAAGACCAAGA-TCCAGGACAAGGAAGGAATCCCACCTGATC 11779 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || ||||| || || ||||||||||||| ||||| || | || |||| Sbjct 11780 AGCAGAGATTGATTTTTGCTGGAAAGCAACTGGAAGACGGCCGCACCTTGAGTGACTACA 11839 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| ||||| || ||||| Sbjct 11840 ACATCCAAAAGGAATCCAC 11858 Score = 87.8 bits (96), Expect = 1e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23614 CAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGAC 23673 ||||||||||| ||||| | || || || || ||||| | || || || | ||||| Sbjct 11209 CAGATTTTCGTAAAAACTTTGACCGGCAAGACAATCACGTTGGATGTCGAGCCTTCGGAC 11268 Query 23674 ACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACA 23732 || |||| ||| | || || || || ||||| ||||| | || || ||||| || Sbjct 11269 ACCATTGACAATGTCAAGAC-CAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAGCA 11327 Query 23733 GCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACAT 23792 | | || || ||||| || || ||| ||||||| | | | || || |||| ||||| || Sbjct 11328 GAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAATAT 11387 Query 23793 ACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || || | || ||||| Sbjct 11388 CCAAAAGGAATCTACTCTTCACTTAGT 11414 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || ||||| || || || || || || || || || | | Sbjct 11889 AATGCAAATCTTTGTGAAGACGCTCACTGGTAAGACTATTACACTGGATGTGGAACCATC 11948 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| || | || || || | | ||||| ||||| | || || |||| Sbjct 11949 TGATACCATTGACAACGTGAAGACCAAGA-TCCAGGACAAGGAAGGAATTCCTCCTGATC 12007 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||| | || ||||| || || ||||||||||||| ||||| || | || |||| Sbjct 12008 AGCAGCGTCTTATCTTTGCTGGAAAGCAACTGGAAGACGGCCGCACCTTGAGTGACTACA 12067 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||| ||||| || || || | || || ||| Sbjct 12068 ACATCCAAAAGGAATCTACCCTTCACTTGGTT 12099 >seq3 Length=497493 Score = 109 bits (120), Expect = 4e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAA 23696 || || || |||||||| || || || | |||||||| |||| || | || || || Sbjct 135192 GGTAAGACCATCACTCTTGATGTCGAGCCATCGGACACTATTGACAACGTCAAGACCAAG 135251 Query 23697 AATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACA 23756 | | ||||| ||||| | || || |||||||| ||| | || |||||||| || || Sbjct 135252 A-TCCAGGACAAGGAAGGAATCCCTCCTGATCAACAACGTCTTATCTTTGCCGGAAAGCA 135310 Query 23757 ACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTT 23816 | ||||||| | |||||| || ||||||||||||| ||||| || ||||| | || || Sbjct 135311 ATTGGAAGATGGACGCACCTTGAGCGATTACAACATCCAAAAGGAATCCACCCTTCACTT 135370 Query 23817 AGTTTTAAGGTTGCGAGGAGGA 23838 ||| | | | ||||||||| Sbjct 135371 GGTTCTTCGTCTCCGAGGAGGA 135392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005072678292