Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq386 150 4e-31 seq456 129 1e-24 seq141 123 6e-23 seq3 118 3e-21 seq22 111 4e-19 >seq386 Length=39556 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| ||||| ||||| ||||||| |||||| ||| | || Sbjct 11427 ACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAGGGT 11368 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | ||||| ||||| || || | || || || || || ||||| || Sbjct 11367 CCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATTCC 11308 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| ||| ||| || |||||||| || | || || || || Sbjct 11307 TTCCTTGTCCTGGATCTTGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACATCCAA 11248 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||| |||||||| ||||||||||||| ||| Sbjct 11247 CGTGATTGTCTTGCCGGTCAAAGTTTTTACGAA 11215 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || | ||| || || ||||| ||||||| ||||| || ||| || Sbjct 12110 CGAAGACGGAGAACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTG 12051 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || ||||| || ||||| ||||| |||||||| || || || || || ||||| ||| Sbjct 12050 CGGCCGTCTTCCAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCT 11991 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| |||||| || ||||| || || | |||||| || | Sbjct 11990 TCCTTGTCCTGGATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAGT 11931 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | || || | || | ||||||| Sbjct 11930 GTAATAGTCTTACCAGTGAGCGTCTTCACAAAGATTTGCATT 11889 Score = 118 bits (130), Expect = 3e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| ||||| |||||||| || || || | |||||| ||| | || Sbjct 11655 ACGAAGACGAAGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCTTAGGGT 11596 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || |||||||| | ||||| ||||| || || | || || || || || || || || Sbjct 11595 CCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCC 11536 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| || ||||| ||| ||| || || ||||| || | || || || || Sbjct 11535 TTCCTTGTCCTGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGACATCCAA 11476 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 |||||| ||||| ||||| | || || | || | ||||||| Sbjct 11475 CGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCATT 11433 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || |||||||| ||||||| ||||| || ||| || | || ||| Sbjct 11873 AGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCT 11814 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| ||||| || || | || || || || || || || ||||||||||| Sbjct 11813 TCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTGTCC 11754 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || ||||| || || | ||| ||||| | ||||| ||| Sbjct 11753 TGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAACGTCCAGTGTGATGGTC 11694 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || | || || | || | ||||||| Sbjct 11693 TTACCAGTGAGTGTCTTCACAAAGATTTGCATT 11661 >seq456 Length=31050 Score = 129 bits (142), Expect = 1e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || |||||||| || |||| ||||| ||| || || | ||||| Sbjct 6844 AGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 6785 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || || ||||| || || || |||||||| ||||| ||||||||||| Sbjct 6784 TCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCC 6725 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || ||||||||||| || | ||||||||| | ||||| ||| Sbjct 6724 TGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACGTCCAGGGTGATGGTC 6665 Query 225682 TTGCCCGTCAAAGTTTTTA 225700 ||||| |||| || |||| Sbjct 6664 TTGCCAGTCAGGGTCTTTA 6646 >seq141 Length=126064 Score = 123 bits (136), Expect = 6e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 || |||||| | || || |||||||| ||||||| |||||||| || ||||| || Sbjct 117143 TCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTCAGAGTTCGACC 117084 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||| || | ||||| || || |||||||| ||||| || || || || || |||||||| Sbjct 117083 ATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGGATTCCTTCCTT 117024 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| |||||||| ||| || ||||| ||||| || | || || || | ||||| Sbjct 117023 GTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGACATCGAGAGTGAT 116964 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | || || | ||| | |||||| Sbjct 116963 GGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 >seq3 Length=497493 Score = 118 bits (130), Expect = 3e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || |||||||| ||||||| ||||||||| ||| || | |||||| Sbjct 135376 AGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCTCAAGGTGCGTCCATCT 135317 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || || |||||||| |||||||| || || || || ||||||||||| Sbjct 135316 TCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGGGATTCCTTCCTTGTCC 135257 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || ||||| || | || || || | ||||| ||| Sbjct 135256 TGGATCTTGGTCTTGACGTTGTCAATAGTGTCCGATGGCTCGACATCAAGAGTGATGGTC 135197 Query 225682 TTGCC 225686 || || Sbjct 135196 TTACC 135192 >seq22 Length=300247 Score = 111 bits (122), Expect = 4e-19 Identities = 148/203 (73%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || ||||||||||| || |||| || || ||| |||||| Sbjct 203630 ACGAAGACGAAGCACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAGTCGCTCAAAGT 203571 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || | ||||| ||||| || ||||| || || || ||||| ||||| || Sbjct 203570 ACGACCATCCTCCAATTGCTTTCCAGCAAATATAAGACGCTGCTGATCGGGAGGAATTCC 203511 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||||||||| ||| ||| || || || || || | || || || || Sbjct 203510 TTCCTTGTCTTGGATCTTGGTCTTGACATTATCAATCGTATCAGATGGCTCTACATCCAA 203451 Query 225672 CGTGATCGTCTTGCCCGTCAAAG 225694 ||||| | ||| || | ||||| Sbjct 203450 AGTGATTG-CTTTCCAG-CAAAG 203430 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| ||||| ||||| | || ||| || || || ||||| ||||||||||| || ||| Sbjct 203444 TGCTTTCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGAATC 203385 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| ||| || |||||||| || | || || || || ||||| ||||| || Sbjct 203384 TTGGTCTTGACATTGTCAATGGTGTCGGAAGGCTCGACATCCAAGGTGATTGTCTTTCCG 203325 Query 225688 GTCAAAGTTTTTATGAA 225704 ||||| ||||||| ||| Sbjct 203324 GTCAATGTTTTTACGAA 203308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192514408042706