Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq55 194 1e-44 seq157 102 7e-17 >seq55 Length=197180 Score = 194 bits (214), Expect = 1e-44 Identities = 418/629 (66%), Gaps = 12/629 (2%) Strand=Plus/Plus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| | ||| ||| ||| ||||| | | ||||| || ||||||| |||| Sbjct 129812 TGGGAAAGGCCCGGGGGGCCCGCTCCAGCTGCTCCTTGAGCGGCTCGACGTGGTTGAGGT 129871 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 ||||||| || || ||||| |||||||| | ||| || || | ||||||| ||||| | Sbjct 129872 AGACGTGGGCGTCCCCCAGCGTGTGGACCAGCTCCCCGGGCTTGCGCCCGGTCACGTGGG 129931 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 ||| | || ||| ||||| | ||||||||| ||||| ||||| ||||| || ||||||| Sbjct 129932 CCACGAGGTGCGTCAGGAGCGCGTAGCTGGCAATGTTGAAGGGGACCCCCAGGCCCATGT 129991 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC------ACGTAAAACT 29843 | | |||| |||||| | ||||| || ||| || | || ||||| |||| Sbjct 129992 CGGCCGACCGCTGGTACATGTGGCAGCTGACCTCGTCGGTGGTCGTGTCGACGTAGAACT 130051 Query 29844 GACACATGGCA--TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGC 29901 | |||| ||| ||||| || || |||||||| ||| | | |||||||||||| Sbjct 130052 GGCACA--GCAGGTGGCAGGGGGGGAGGGCCATCTCGTCCAGGGCGGAGGGGTTCCAGGC 130109 Query 29902 ACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAG 29961 | || || ||| || | ||| || ||||||| | |||| ||| | | | ||| Sbjct 130110 GCTCATGAGGATCCGGCGGTCCTCCGGGTTGTGCTTGATCTTGTCGATGCACTCGGCCAG 130169 Query 29962 CTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATG 30021 ||| || || ||| ||| | |||||| | | || || Sbjct 130170 CTGGTCGACGCCCTGCCCGGTGTAGTCGGTGTGCATGTCCTTGTACTCGGCGCCAAAGTG 130229 Query 30022 CCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCC-C 30080 || |||||| || ||||| || || |||||||| ||||| || | ||| || ||||| | Sbjct 130230 CCGCCACTGAAAGCCGTAGACGGGGCCCAGGTCGCCCTCCTCTCGGTG-TCCSAGCCCGC 130288 Query 30081 TCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGA 30140 || | || || |||| |||| ||||||||||| | ||| || || Sbjct 130289 GGGCCTCGAGGAATTCCTTGGAGGCGTTTCCGTCCCAGATCCCGATGTTCTTTTCCTTGA 130348 Query 30141 GCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCC 30200 | |||| ||| ||| || || |||||| || || ||||| |||| || ||| Sbjct 130349 GGAGGTTGGCGTTGGTGCTGCCGGAGATGAACCAGAGGAGTTCCTCGGCGACTCCCCTCC 130408 Query 30201 AAAAGACCCTCTTGGTCGTGAGGAGGGGA 30229 | ||| |||| || || || || ||| Sbjct 130409 AGAAGGTTTTCTTCGTGGTCAGCAGCGGA 130437 >seq157 Length=115544 Score = 102 bits (112), Expect = 7e-17 Identities = 220/325 (68%), Gaps = 12/325 (4%) Strand=Plus/Plus Query 49871 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGCATCACACCCAA 49930 ||||||| | ||||||||| |||| ||| ||| | | |||| ||||| | || || | Sbjct 5193 TCTCGAGGATGAGCTGGGCGATCCGGTCCCCCTTTTGGACCTGAAAGTCCTCGGTGCCGA 5252 Query 49931 AGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 49990 ||| || || | |||||||| | |||| |||||| | ||| ||||||||||| ||| Sbjct 5253 GGTTGAAGAGGACGACGCCGACGGGCCCCCGGTAGTCCGCGTCGACCACCCCGGCCCCGC 5312 Query 49991 CGTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 50050 ||| || ||| || | ||| || || |||| ||| || | || | ||||| | |||| Sbjct 5313 AGTCGATCCCCTTCTTGACGGCGAGTCCCGACCGGGGGGCGATCCGGGCGTAG-GTCCCG 5371 Query 50051 G--GGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCCCTGCCGAAGGAGGGGA---- 50104 | ||||| | | ||||| || | || | ||| |||| | |||| Sbjct 5372 GGCGGGCA-GGCGATGCTCAGGTCGGTGTGGACGATCCCCCGGCCGCCCGCCGGGATGGT 5430 Query 50105 CCACGACGGGGTGAGCGGCCGCCAGGTCGTAACCGGCGGCTCCCGCGCTGCCCCTGACGA 50164 || | || | ||||||||||||| | ||||||| | | ||||||||| ||| Sbjct 5431 TTGCGGCCGGCT----GGCCGCCAGGTCGAAGCCGGCGGACCACTCGCTGCCCCGGACCG 5486 Query 50165 GGCCCGAAGCGTGCTCAGAGAGCTT 50189 || | |||| ||| |||||||| Sbjct 5487 GGAGGGTGGCGTTCTCCGAGAGCTT 5511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406157759824714