Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3 203 5e-47 seq108 134 2e-26 >seq3 Length=497493 Score = 203 bits (224), Expect = 5e-47 Identities = 501/757 (66%), Gaps = 14/757 (2%) Strand=Plus/Minus Query 77687 TGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAG 77746 ||| ||||| || || || ||||| | ||| | |||||| || || || || ||||| Sbjct 139838 TGCAAGATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAG 139779 Query 77747 ATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTT 77806 |||||| |||| || || || | ||| | |||||| || |||| ||| | ||||| Sbjct 139778 ATTACTGCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCATTAGCGGCATCCTT 139719 Query 77807 ATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGAC 77866 ||| || || | ||||| || ||||| || || ||||| | ||| | ||| || | Sbjct 139718 ATATAGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCAGAATTGCGGACCATACCTC 139659 Query 77867 TCTAGCTTTTATC------ATAGATTTGTATCGCCTCTCTCTTTCATATTGAGTATATAG 77920 || || ||| | | |||| ||| ||| |||| |||| |||||| Sbjct 139658 TCGGGCAGGCATCTGGCGAACATATTTT-----CCT-TCTTTTTCGTATTTTTCATATAG 139605 Query 77921 CCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAA 77980 ||||| || | ||| | || | |||||||||| || || ||||||| Sbjct 139604 TTCCTCAAAYTCTTTTCCGCTGCACTCTGGGAGGCCAGGGCATTGATCGGGACACATCAG 139545 Query 77981 TGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 78040 ||||| |||| | || |||||||||||||| | |||||| |||||||| | Sbjct 139544 ACTCCAGTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATAGGCCGTA 139485 Query 78041 AAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGT-ATTCTTTTTAAGATCGAGAAACT 78099 |||||||||||| | || |||||||| ||||| || |||||||| |||| |||| | Sbjct 139484 AAATAGATCTCGAGCTCGCTGTTCTTC-TTTCCCGTGGTTCTTTTTCAGATTAAGAACGT 139426 Query 78100 CCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTAC 78159 | | ||| || |||||||| ||||| | || | || | | ||||| || || || Sbjct 139425 CGAAAATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCAC 139366 Query 78160 CTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGT 78219 |||| ||||| | ||||| || || || ||||| | | ||| |||| | || | Sbjct 139365 CTCCTTGATCAACGTATCTCGCTGTCACATCGTAAACGCGAAGCATAGGAACCAGTCCAT 139306 Query 78220 TAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATA 78279 | || || || ||| || || | || || || |||||||| | | | Sbjct 139305 TGGAAGTACCTCGTGTACCCTTGATGGGAGACCCCCTAGCTCGAATATTGTGCACGCTCA 139246 Query 78280 TCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATAC 78339 || ||||| || || || ||||| | |||||| || || |||||||| || || | Sbjct 139245 ATCCAATTCCACCAGCAGATTTGGATATGACAGCGCATCGCTTTAATGTATCATATATGC 139186 Query 78340 CCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAG 78399 || || || || |||| | || | ||||| || || | ||| ||||| | Sbjct 139185 CCGAAATTGAATCGTCACTCATTTGAACCAAGAAACAACTCGATAGCTGAGGATGAGTCG 139126 Query 78400 TTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAA 78436 |||| | || ||||| ||| ||||||||||| ||||| Sbjct 139125 TTCCAGAATGAAATAGTGTAGGAGATGCATGGGTAAA 139089 >seq108 Length=147947 Score = 134 bits (148), Expect = 2e-26 Identities = 422/649 (65%), Gaps = 4/649 (1%) Strand=Plus/Minus Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCA-GTCACCATCTTCCTTAACTCGTTTCAT 78013 || ||||| || | || |||||||| | ||| ||| || | |||| || |||| ||| Sbjct 13014 CCGGGGCACTCGTCGGGACACATCAACGTCCATGTC-CCGTTGGCCTTGACACGTTCCAT 12956 Query 78014 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCC 78073 || || ||||| ||||| |||| ||| | ||| || | | || |||| || || Sbjct 12955 GAACAGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGCGCGATCGGCTTCGTTCCC 12896 Query 78074 TGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 78133 || || |||||| | ||| | | ||||| | ||||| || || | || || Sbjct 12895 GTGGTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTGCCAGGGCTCCAAGTAAAT 12836 Query 78134 TGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATA 78193 || || ||| || || || |||||||| | |||| ||||||||| || | Sbjct 12835 GGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAA 12776 Query 78194 AACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCC 78253 || | |||||| || | || || || ||||| || || |||||| ||| || | Sbjct 12775 GACACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGTTCCACGAATGTAGGATTT 12716 Query 78254 ACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGC 78313 ||| || ||||| || | | | || ||||| ||||| ||| || || | || Sbjct 12715 ACTGGCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGCGTACTTCGAAATCACGGC 12656 Query 78314 GCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAA 78373 ||| | || | ||| |||||||| || || || ||| ||| |||| | | ||||| Sbjct 12655 GCAGCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTCCTTCATTGTCAACAGAAA 12596 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 ||| ||||| ||| | | ||||| || || || | ||||| | ||||| || Sbjct 12595 ACAAGAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAGGGTCGGTGTGGCATGGGT 12536 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTC-AATAGCTGATTCTATGTCCCATTGAT 78492 || || ||| || || || || || || || | | | | | || || | | Sbjct 12535 GAAGTATCGTTCCGAGAGGCCTTTATAGGTCTCCAAGACCCGCT-CGATATCATCTCCGT 12477 Query 78493 GAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTA 78552 ||||||| || || || ||||||||||| ||| |||| ||| | |||| ||| | Sbjct 12476 GAATTCCAACGGCGACGCGCATCAACATGCACTGTGGTCGTTCTGCGATCTTGCCATTGA 12417 Query 78553 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 || | |||||| || || || | |||||||||||||| || | ||| Sbjct 12416 GCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAAAACCAAAGTAATCGTA 12368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694659256987360