Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 185 1e-41 seq108 156 6e-33 >seq3 Length=497493 Score = 185 bits (204), Expect = 1e-41 Identities = 500/758 (66%), Gaps = 16/758 (2%) Strand=Plus/Minus Query 76282 TGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAG 76341 ||| ||||| || || || ||||| | | | | |||||| || || || |||||||| Sbjct 139838 TGCAAGATTGCATACAGCAACCTCTTCTTCGTCCGTATATTGGATAATTTCTGTGCATAG 139779 Query 76342 ATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTT 76401 |||||| || | || ||||||| ||| | |||||| || |||| ||| | ||||| Sbjct 139778 ATTACTGCATTGAATTGTTCCAATATTCTTTTGGTTACTTTTTTCATTAGCGGCATCCTT 139719 Query 76402 ATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGAC 76461 ||| || | | |||||||| ||||| || || ||||| | ||| | ||| || | Sbjct 139718 ATATAGCATGTAAGGAGTTCCTGTTTCGATTTGGGATTCCAGAATTGCGGACCATACCTC 139659 Query 76462 TCTAGCTTTTATT------ATAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAA 76515 || || || | | |||| || ||||| | ||| |||| | ||||| Sbjct 139658 TCGGGCAGGCATCTGGCGAACATATTT---TC-CTTCTTT--TTCGTATTTTTCATATAG 139605 Query 76516 CCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAA 76575 ||||| || | ||| | || | ||||| |||| || |||||||||| Sbjct 139604 TTCCTCAAAYTCTTTTCCGCTGCACTCTGGGAGGCCAGGGCATTGATCGGGACACATCAG 139545 Query 76576 TGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAAT 76635 ||| | |||| | || || ||||||||||| | |||||| |||||||| | Sbjct 139544 ACTCCAGTTTTCATCGTTCTCTACTCGTTTCATAAACAAATCAGGGATCCATAGGCCGTA 139485 Query 76636 AAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGT-ATTCTTTTTAAGATCTAGGAAC- 76693 |||||||||||| | || ||||||| ||||| || |||||||| |||| || |||| Sbjct 139484 AAATAGATCTCGAGCTCGCTGTTCTTC-TTTCCCGTGGTTCTTTTTCAGAT-TAAGAACG 139427 Query 76694 TCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTA 76753 || | ||| || |||||||| ||||| | || | || | |||| || || || | Sbjct 139426 TCGAAAATGTCCGAATGCCAGGGTTCAATGTAAACAGCAAATGCACCAGGCCGCTTTCCA 139367 Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||||| || || || ||||| | | ||| |||| | || Sbjct 139366 CCTCCTTGATCAACGTATCTCGCTGTCACATCGTAAACGCGAAGCATAGGAACCAGTCCA 139307 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || ||||| ||| || || | || | || |||||||| | Sbjct 139306 TTGGAAGTACCTCGTGTACCCTTGATGGGAGACCCCCTAGCTCGAATATTGTGCACGCTC 139247 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||| || || ||| || || | ||| || || || ||||| ||||| ||| Sbjct 139246 AATCCAATTCCACCAGCAGATTTGGATATGACAGCGCATCGCTTTAATGTATCATATATG 139187 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACA 76993 ||| || ||| || |||| | || | ||||| || || | ||| ||||| Sbjct 139186 CCCGAAATTGAATCGTCACTCATTTGAACCAAGAAACAACTCGATAGCTGAGGATGAGTC 139127 Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAA 77031 ||||| | || ||| | ||||||||||||||| || || Sbjct 139126 GTTCCAGAATGAAATAGTGTAGGAGATGCATGGGTAAA 139089 >seq108 Length=147947 Score = 156 bits (172), Expect = 6e-33 Identities = 425/649 (65%), Gaps = 2/649 (0%) Strand=Plus/Minus Query 76549 ACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCAT 76608 ||| || || || | ||||||||||| | ||| || | |||| || |||| ||| Sbjct 13015 ACCGGGGCACTCGTCGGGACACATCAACGTCCATGTCCCGTTGGCCTTGACACGTTCCAT 12956 Query 76609 AAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCC 76668 || || ||||| ||||| |||| ||| | ||| || | | | |||| || || Sbjct 12955 GAACAGGTCAGGGATCCAGAGAGAGTAAAACAAATCACGTGCGCGATCGGCTTCGTTCCC 12896 Query 76669 TGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 76728 || || |||||||| || | | ||||| | ||||| || || | || || Sbjct 12895 GTGGTTTTTGCGAAGATCTAAAAAGGCAAAGATATCTGCGTGCCAGGGCTCCAAGTAAAT 12836 Query 76729 CGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATA 76788 || || ||| || || || |||||||| | |||| ||| ||||| || | Sbjct 12835 GGCAATGCTTCCCTTGCGCTTGCCTCCACCCTGATCGACGTATCKGGCGGTGTTGTTGAA 12776 Query 76789 AACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCC 76848 || | |||||| || | ||||| || |||||||| || |||||| ||| || | Sbjct 12775 GACACGCAACATGGGGACGATGCCATTGGATGTACCGTTGGTTCCACGAATGTAGGATTT 12716 Query 76849 ACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGC 76908 || |||||||| || | | || || ||||| ||||| || || || | || Sbjct 12715 ACTGGCACGAATGTTGTGGGTTGCCAGACCAATTCCACCTGCGTACTTCGAAATCACGGC 12656 Query 76909 ACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAA 76968 |||| || | |||||| |||||||| || || || ||| |||| | | ||||| Sbjct 12655 GCAGCTCTTGAGTGTGTCGTAGATGCCATCGATGGAGTCTTCCTTCATTGTCAACAGAAA 12596 Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028 ||| ||||| ||| | | ||||| || || || | || || | ||||| || Sbjct 12595 ACAAGAGGACATCTGAGGGTTGTTGGTTCCGGCGTTGAAGAGGGTCGGTGTGGCATGGGT 12536 Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTC-AATAACTGCTTCTATATCCCATTGAT 77087 ||| || ||| || || || || || || || | | ||| | ||||| | | Sbjct 12535 GAAGTATCGTTCCGAGAGGCCTTTATAGGTCTCCAAGACCCGCT-CGATATCATCTCCGT 12477 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 ||||||| || ||||| ||||||||||| ||| ||||||||| | |||| ||| | Sbjct 12476 GAATTCCAACGGCGACGCGCATCAACATGCACTGTGGTCGTTCTGCGATCTTGCCATTGA 12417 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 77196 || | |||||| || || || | |||||||||||||| || | ||| Sbjct 12416 GCTTRAGCAAGTAGGACTTCTCGAGGGTTTTAAAACCAAAGTAATCGTA 12368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712924606063680