Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq217 682 0.0 >seq217 Length=78499 Score = 682 bits (756), Expect = 0.0 Identities = 783/1044 (75%), Gaps = 7/1044 (1%) Strand=Plus/Plus Query 183187 TGGGAATCCTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTT 183246 |||||| |||| | | ||||| || ||||| |||||||||| || | |||||||| Sbjct 40572 TGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTC 40631 Query 183247 GGCACACTGATGATTCCAACTCTGTTGGCAGCAACCATC-TGCTTCATCGTTGCCTTCGT 183305 || || | ||| | |||||||| | || ||| | ||| |||||||| ||| || | Sbjct 40632 GGTACTATCATGTTCCCAACTCTTCTTGCCGCAGC-ATCATGCTTCATTACTGCATTTAT 40690 Query 183306 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTA 183365 || || |||||||||||||| ||||| ||||||||||| ||||| || || || | || Sbjct 40691 TGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTA 40750 Query 183366 TGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTT 183425 || || ||||||||| | || | || | ||||||| ||||||||| || | ||||| Sbjct 40751 CGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTT 40810 Query 183426 CTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCA 183485 ||| ||| | |||||||| || || | || || ||| |||| ||||| || || ||||| Sbjct 40811 CTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCA 40870 Query 183486 ACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGC-TACATGGGTCGTGAGTGGGAAT 183544 | | || || | |||||||| | || || | || | |||||||| |||||||||||| Sbjct 40871 ATTGGTTGTGATGCACTTCCTTCTCGGAGT-TGCTTCGTACATGGGCCGTGAGTGGGAAC 40929 Query 183545 TGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTG 183604 | || || || ||||| |||||||||||||| | |||||| | |||||||||||| | Sbjct 40930 TTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAG 40989 Query 183605 CTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGC 183664 | || |||||||||||||| ||| || | || ||||| ||| ||||| |||| Sbjct 40990 CCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGC 41049 Query 183665 CCCTGGGTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCC 183724 | || |||||||| || ||||| |||| ||| | |||||||| || ||||||||||||| Sbjct 41050 CTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCC 41109 Query 183725 TGATGCACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTG 183784 | |||||||| | || ||| || || || ||||||||||| || ||| ||||| | Sbjct 41110 TTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCG 41169 Query 183785 CAATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCAC 183844 | |||||||| ||||| ||||||||||| || | ||||||||||| || || || Sbjct 41170 CCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCA 41229 Query 183845 AGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATG 183904 || | || |||||||| || || ||||| || ||||||||||||||||| ||||| | Sbjct 41230 CCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACG 41289 Query 183905 GATACTTTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACT 183964 | |||||||| ||||| |||||||| || || ||||| ||||| || ||| ||||||||| Sbjct 41290 GGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACT 41349 Query 183965 TCTTCCTTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTA 184024 ||||| | ||| ||||| || | || ||||||| || || | ||||| ||| | Sbjct 41350 TCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCA 41409 Query 184025 TGGCATTTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTG 184084 |||| || ||||| || || || |||||||||||| | |||| || | || |||| Sbjct 41410 TGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACGTG 41469 Query 184085 TCCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACG 184144 || | ||||||||||| ||| | |||||||||| | |||||| ||||| || ||||||| Sbjct 41470 TCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACG 41529 Query 184145 AGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAG-TCCACTCCTGTGGCA 184203 | ||||||||||| ||||| ||||| || | ||| ||| ||| | | | ||||| ||| Sbjct 41530 AACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTGGCGAGATTCTC-CCTGTCGCA 41588 Query 184204 CTCCAAGCACCTGCTATCGGTTGA 184227 | | || || || ||| ||||| Sbjct 41589 ATGGAGGCCCCAGCCATC-GTTGA 41611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622061854307880