Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq217 749 0.0 >seq217 Length=78499 Score = 749 bits (830), Expect = 0.0 Identities = 772/1008 (77%), Gaps = 2/1008 (0%) Strand=Plus/Plus Query 163915 CACCTGGGAACAATTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTG 163974 ||| |||||| |||||| |||||| | || |||||||| || | || ||||||| Sbjct 40568 CACGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTG 40627 Query 163975 GTTCGGCGTCCTGATGATTCCCTGC-CTGCTGGCAGCGACTACATGTTTCATCATCGCCT 164033 |||||| | ||| ||||| | || || || || | |||| ||||| | || | Sbjct 40628 GTTCGGTACTATCATG-TTCCCAACTCTTCTTGCCGCAGCATCATGCTTCATTACTGCAT 40686 Query 164034 TCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCA 164093 | || | || |||||||||||||| || || ||||||||||| || || || || || Sbjct 40687 TTATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTC 40746 Query 164094 TGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGC 164153 | || || || ||||||||| | || |||| |||||||||| ||||| ||||| ||| Sbjct 40747 TTTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGC 40806 Query 164154 ACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTT 164213 ||||||||||| | |||||||| || ||||||||||| | |||||||| || || | Sbjct 40807 ACTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCT 40866 Query 164214 TCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGG 164273 |||| | |||||| | |||||||| | || | | | |||||||| |||||||||| Sbjct 40867 ACCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGG 40926 Query 164274 AACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCG 164333 ||||||| || || || || |||||||||||||||| || |||| ||| || ||||| | Sbjct 40927 AACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTG 40986 Query 164334 CTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAA 164393 | || || | || || ||||| ||| || | || ||||| |||||| |||| | Sbjct 40987 CAGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCA 41046 Query 164394 TGCCTCTGGGCATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACA 164453 ||||||| || ||| ||||||||||||| |||||||||||||||||| |||||||||| Sbjct 41047 TGCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACA 41106 Query 164454 TCCTCATGCACCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCA 164513 |||| |||||||| | |||||| ||| || |||||||| || || || ||| ||||| Sbjct 41107 TCCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCT 41166 Query 164514 GTGCAATGCACGGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGT 164573 || |||||||| || || |||||||| || || | ||||| ||||||||||| || | Sbjct 41167 CCGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAAT 41226 Query 164574 CCCAGAACTATGGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTC 164633 || || | || ||||||||||| |||||||| |||||||||||||| || ||||||| Sbjct 41227 CCACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTC 41286 Query 164634 ACGGTTACTTTGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGC 164693 |||| |||||||| ||||| || ||||||||||| || ||||||||||| ||| | || | Sbjct 41287 ACGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTC 41346 Query 164694 ACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCA 164753 |||||||| | || |||||||| | |||||||||| || || |||| || || Sbjct 41347 ACTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCA 41406 Query 164754 CCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTC 164813 ||||||| |||||||||||||| ||||||||||||||| | ||||||| |||| | Sbjct 41407 CCATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGAC 41466 Query 164814 GTGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGC 164873 |||| ||||||||||||| ||| | |||||||||| | ||| || ||||| || |||| Sbjct 41467 GTGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGC 41526 Query 164874 ACGAGCGTAATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGAGA 164921 |||| ||||||||||| ||||| ||||| || | ||| ||| |||| Sbjct 41527 ACGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTGGCGAGA 41574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557646739222680