Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq141 111 4e-19 seq386 107 4e-18 >seq141 Length=126064 Score = 111 bits (122), Expect = 4e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | ||| || || || || ||||||||||||||||| | ||||| ||||| Sbjct 117139 AGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTCAGAGTTCGACCATCC 117080 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| ||||| |||||||| | ||||| |||| | |||||||||||| | Sbjct 117079 TCCAATTGCTTT--CCGGCAAAGATAAGACGTTGCTGATCCGGTGGGATTCCTTCCTTGT 117022 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | || || || ||||| | || | |||| || ||| || || ||||| || | Sbjct 117021 CCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGACATCGAGAGTGATGG 116962 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||| ||||||| ||||| Sbjct 116961 TCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 >seq386 Length=39556 Score = 107 bits (118), Expect = 4e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| ||||| || || || ||||| ||| || || || |||||| Sbjct 11645 AGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCTTAGGGTCCTTCCATCT 11586 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || | ||||| || || || || | |||||||| || | | |||||||||||| | Sbjct 11585 TCCAATTGCTTT--CCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTGT 11528 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 | ||||| || |||||| | || | |||| ||| ||| || || | || |||| Sbjct 11527 CCTGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGACATCCAACGTGATAG 11468 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || |||||||| ||||| || |||| |||||| Sbjct 11467 TCTTTCCCGTGAGGGTCTTGACAAAGATTTGCATT 11433 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 151902 TGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GC 151959 ||||||||||| || |||||||| ||||| ||| || || || |||||||| | || Sbjct 11408 TGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTTAGGGTCCTTCCATCTTCCAATTGC 11349 Query 151960 TTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTT 152019 ||| || || || || | |||||||| |||| | ||||||||||| || || || | Sbjct 11348 TTT--CCAGCAAAAATCAATCTCTGCTGATCCGGAGGAATTCCTTCCTTGTCCTGGATCT 11291 Query 152020 TTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCG 152079 | |||||| | || | | |||| ||| ||| || || | || || || ||||| | Sbjct 11290 TGGTCTTGACATTGTCAATGGTGTCCGAAGGCTCGACATCCAACGTGATTGTCTTGCCGG 11231 Query 152080 TGAGAGTCTTCACGAAGACCTG 152101 | | ||| || ||||| | ||| Sbjct 11230 TCAAAGTTTTTACGAAAATCTG 11209 Score = 96.9 bits (106), Expect = 8e-15 Identities = 150/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| ||||| || |||||||||||||| || || || | || ||||| | Sbjct 12096 CAAG-TGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGCCGTCTTCCA 12038 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || || |||||||| | |||||| || | | ||||||||||| || || Sbjct 12037 GTTGCTTT--CCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTG 11980 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || || || | || | | | || || || || || || |||||||| || Sbjct 11979 GATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTCTT 11920 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| |||||||| |||| |||||| Sbjct 11919 ACCAGTGAGCGTCTTCACAAAGATTTGCATT 11889 Score = 84.2 bits (92), Expect = 5e-11 Identities = 154/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | |||||| | ||||| || || || |||||||||||||| || || || Sbjct 11882 CTTAGACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCACTCAAGGTG 11823 Query 151944 CTCCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTC 152001 | || ||||| || ||||| || || || || | |||||||| || | | ||||| Sbjct 11822 CGGCCGTCTTCCAGTTGCTTT--CCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTC 11765 Query 152002 CTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAA 152061 ||||||| || || || || || || | || | | | || || || || || | Sbjct 11764 CTTCCTTGTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAACGTCCA 11705 Query 152062 GAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || || || ||||| |||||||| |||| |||||| Sbjct 11704 GTGTGATGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCATT 11661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153804553121429