Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq217 668 0.0 >seq217 Length=78499 Score = 668 bits (740), Expect = 0.0 Identities = 748/998 (75%), Gaps = 2/998 (0%) Strand=Plus/Plus Query 177589 TGGGAACAATTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTC 177648 |||||| |||||| |||||| | || |||| |||| || || || ||||||||||| Sbjct 40572 TGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTGGTTC 40631 Query 177649 GGTGTCCTGATGATCCCTACGCTGCTCGCTGCTGCTATC-TGTTTCATCGTCGCTTTCGT 177707 ||| | ||| |||| || || || || || || ||| || ||||| || || | Sbjct 40632 GGTACTATCATGTTCCCAACTCTTCTTGCCGCAGC-ATCATGCTTCATTACTGCATTTAT 40690 Query 177708 CGCTGCTCCTCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTA 177767 || || |||||||||||||| ||||| ||||| ||||| || || || || || | || Sbjct 40691 TGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCTTTA 40750 Query 177768 TGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTT 177827 || || |||||||| | || |||| | ||||||| ||||| || || | ||||| Sbjct 40751 CGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCACTT 40810 Query 177828 CTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCA 177887 ||| ||| | |||||||| || || | || || ||| | ||||| || || || | ||| Sbjct 40811 CTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTACCA 40870 Query 177888 ACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACT 177947 | | ||| | | |||||||| |||| | | | |||||||| |||||||||||||| Sbjct 40871 ATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGAACT 40930 Query 177948 TTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGC 178007 ||| || ||||| || |||||||| ||||| | ||| |||| ||| || || || || || Sbjct 40931 TTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGCAGC 40990 Query 178008 AGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCC 178067 || | ||||| ||||| || || | || ||||| |||||| || | ||||| Sbjct 40991 CGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCATGCC 41050 Query 178068 CCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCT 178127 || |||||||| || |||||||||| |||| | |||||||| || |||||||||||||| Sbjct 41051 TCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACATCCT 41110 Query 178128 GATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGC 178187 |||||||| | || ||| || || || |||||||| || || ||| ||||| || Sbjct 41111 TATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTCCGC 41170 Query 178188 GATGCACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCA 178247 |||||||| ||||| ||||||||||| || | |||||||||||||| |||||| Sbjct 41171 CATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATCCAC 41230 Query 178248 GAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGG 178307 || | || |||||||| || || ||||| || ||||||||||| || || ||||| || Sbjct 41231 CAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCACGG 41290 Query 178308 TTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTT 178367 ||||| || || || |||||||||||||| || ||||||||||| ||| | || ||||| Sbjct 41291 GTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCACTT 41350 Query 178368 CTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCAT 178427 |||| | || |||||||| | |||||||||| ||| || | ||||| |||||| Sbjct 41351 CTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCACCAT 41410 Query 178428 GGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGT 178487 ||| |||||||||||||| ||||||||||||||| | |||| || |||| || Sbjct 41411 GGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACGTGT 41470 Query 178488 CCTGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGA 178547 | | ||||||||||| ||| | |||||||||| | |||||| ||||| ||||||||||| Sbjct 41471 CATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCACGA 41530 Query 178548 GCGTAATGCTCACAACTTCCCTCTTGACCTCGCTGCTG 178585 ||||||||||| ||||| |||||||| | ||| ||| Sbjct 41531 ACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596299008229840