Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq217 729 0.0 >seq217 Length=78499 Score = 729 bits (808), Expect = 0.0 Identities = 762/1001 (76%), Gaps = 0/1001 (0%) Strand=Plus/Plus Query 169339 CACCTGGGAACAATTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTG 169398 ||| |||||| |||||| |||||| | || ||| |||||||| || || ||||||| Sbjct 40568 CACGTGGGAAAAATTCTCCAACTGGATCACAAGCACCGACAACCGCCTTTACATCGGTTG 40627 Query 169399 GTTCGGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTT 169458 |||||| | ||| |||| || || || ||| | | || ||||| | || || Sbjct 40628 GTTCGGTACTATCATGTTCCCAACTCTTCTTGCCGCAGCATCATGCTTCATTACTGCATT 40687 Query 169459 CATCGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGAT 169518 || | || || ||||||||||| ||||| ||||||||||| ||||| || ||||| | Sbjct 40688 TATTGCCGCACCTCCTGTGGACATTGACGGAATCCGCGAACCTGTTGCCGGATCTCTTCT 40747 Query 169519 GTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCA 169578 || ||||| ||||||||| | || |||| | || |||| |||||||||||| | || Sbjct 40748 TTACGGTAATAACATCATCACCGGGTCTGTCATCCCTTCTTMCAACGCAATCGGGATGCA 40807 Query 169579 CTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTT 169638 |||||| ||| | |||||||| || | || ||||||||||||||||| || || | Sbjct 40808 CTTCTACCCCGTTTGGGAAGCTGCCTCCATGGACGAATGGTTGTACAACGGAGGACCCTA 40867 Query 169639 CCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGA 169698 |||| ||||||| | |||||||| |||| | | | |||||||| ||||||||||| Sbjct 40868 CCAATTGGTTGTGATGCACTTCCTTCTCGGAGTTGCTTCGTACATGGGCCGTGAGTGGGA 40927 Query 169699 ATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGC 169758 | | || ||||| || || ||||| |||||||| | |||||| | ||| || || ||||| Sbjct 40928 ACTTTCGTATCGCCTCGGAATGCGTCCTTGGATTTTTGTTGCATTCTCCGCACCTGTTGC 40987 Query 169759 GGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTAT 169818 || ||| ||||||| ||||| |||||| |||||||||| ||||| || | || Sbjct 40988 AGCCGCCACCGCTGTCTTCCTCACCTACCCCATTGGGCAAGGAAGTTTCTCAGATGGCAT 41047 Query 169819 GCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACAT 169878 |||||| |||||| |||||||| |||| |||| |||||||||| || ||||||||||| Sbjct 41048 GCCTCTTGGTATCAGCGGAACCTTCAACTTCATGTTGGTCTTCCAGGCCGAGCACAACAT 41107 Query 169879 CCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAG 169938 ||| |||||||| | || ||| || ||||| || || || || || ||| |||| Sbjct 41108 CCTTATGCACCCGCTTCATATGGCCGGAGTTGCAGGTGTCTTCGGAGGATCTTTGTTCTC 41167 Query 169939 CGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTC 169998 ||| |||||||| || || ||||| | | |||||||||||||||| ||||| || Sbjct 41168 CGCCATGCACGGGTCTCTTGTTACTTCCTCTTTGATCCGTGAAACCACCGAAAACGAATC 41227 Query 169999 CCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCA 170058 | || | || |||||||| || || ||||| || ||||||||||| || |||||||| Sbjct 41228 CACCAATAACGGATACAAGTTTGGCCAGGAAGAGGAAACCTACAACATTGTCGCCGCTCA 41287 Query 170059 CGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCA 170118 ||| ||||| || || || |||||||||||||| || ||||||||||| ||| | || || Sbjct 41288 CGGGTACTTTGGACGTCTCATCTTCCAATACGCGTCGTTCAACAACTCGCGTGCTCTTCA 41347 Query 170119 CTTCTTCCTCGCAGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCAC 170178 ||||||| | || |||||||| | || ||||||| |||||| | ||||||||||| Sbjct 41348 CTTCTTCTTAGCTCTCTGGCCTGTATTGGGTATCTGGTGCACCGCCATGGGTGTCTCCAC 41407 Query 170179 GATGGCGTTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCG 170238 ||||| |||||||| ||||| ||||||||||||||| | ||||||| |||| || Sbjct 41408 CATGGCCTTCAACCTCAACGGATTCAACTTCAACCAGGCTGTCATCGACTCCGAGGGACG 41467 Query 170239 TGTGCTCAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCA 170298 ||| ||||||||||||| ||| | |||||||||| | |||||| ||||| || ||||| Sbjct 41468 TGTCATCAACACCTGGGCCGACATAATCAACCGTGCCGATCTTGGAATGGAGGTCATGCA 41527 Query 170299 CGAGCGTAATGCTCACAACTTCCCTCTCGACCTCGCTGCTG 170339 ||| ||||||||||| ||||| ||||| || | ||| ||| Sbjct 41528 CGAACGTAATGCTCATAACTTTCCTCTTGATTTGGCTTCTG 41568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592190264674480