Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq456 161 2e-34 seq141 154 3e-32 seq3 143 6e-29 seq386 138 2e-27 seq22 98.7 2e-15 seq370 86.0 1e-11 seq350 86.0 1e-11 seq209 86.0 1e-11 seq98 86.0 1e-11 seq78 86.0 1e-11 seq56 86.0 1e-11 seq53 86.0 1e-11 seq44 86.0 1e-11 seq19 86.0 1e-11 >seq456 Length=31050 Score = 161 bits (178), Expect = 2e-34 Identities = 170/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||| |||||| |||| || | ||| ||| || |||||||||||||| Sbjct 6859 CCTCCCCGCAAGCGAAGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTC 6800 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| | ||| || ||||||||||| | ||| || ||||| ||| Sbjct 6799 AGGGTGCGGCCATCCTCCAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGA 6740 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| | ||| ||| | ||||| ||||| || | ||| || Sbjct 6739 ATTCCTTCCTTGTCCTGGATCTTGGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACG 6680 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 || || ||||| ||||| || |||| ||||| || || ||||| Sbjct 6679 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq141 Length=126064 Score = 154 bits (170), Expect = 3e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 282885 CGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCA 282944 || || |||| ||| | ||| ||| |||||||||||||| ||| || || || ||| Sbjct 117142 CGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACTCAGAGTTCGACCA 117083 Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 ||||| | ||| || ||||||||||| | |||||| || || || || || |||||| Sbjct 117082 TCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGTGGGATTCCTTCCTTG 117023 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 || |||||||| | || ||| | ||||| |||||||| | ||||| ||||||||||| Sbjct 117022 TCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCGACATCGAGAGTGATG 116963 Query 283065 GTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || | ||||| ||||| || ||||| Sbjct 116962 GTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCAT 116928 >seq3 Length=497493 Score = 143 bits (158), Expect = 6e-29 Identities = 154/201 (77%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 || || || || ||||| |||| || | ||| ||| |||||||||||||| || | Sbjct 135391 CCTCCTCGGAGACGAAGAACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCTC 135332 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||| ||||| || | ||| || ||||||||||| | ||||||||| ||| || Sbjct 135331 AAG-GTGCGTCCATCTTCCAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGG 135273 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||||| | || ||| | || ||||||||||| | ||||| Sbjct 135272 GATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCAATAGTGTCCGATGGCTCGAC 135213 Query 283052 TTCGAGAGTGATCGTCTTACC 283072 || |||||||| |||||||| Sbjct 135212 ATCAAGAGTGATGGTCTTACC 135192 >seq386 Length=39556 Score = 138 bits (152), Expect = 2e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 282882 AGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCA-GCAAGCGTGCG 282940 || || || |||| || | |||| ||| |||||||||||||||||| |||| ||||| Sbjct 11879 AGACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTAGTCACTCAAG-GTGCG 11821 Query 282941 GCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTC 283000 ||| || || ||||| || || ||||| ||||| | || || ||| || || || || Sbjct 11820 GCCGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTC 11761 Query 283001 CTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGT 283060 |||||| |||||||| | || ||| |||| || || || || | ||| || || || || Sbjct 11760 CTTGTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACGGTTCAACGTCCAGTGT 11701 Query 283061 GATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| |||||||| || | ||||| || || || |||||| Sbjct 11700 GATGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCATT 11661 Score = 131 bits (144), Expect = 4e-25 Identities = 147/194 (76%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCA-GCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAA 282966 ||| |||||||||||||||||| |||| |||||||| || || ||||| || || |||| Sbjct 12081 TTCCTTTTGGATGTTGTAGTCACTCAAG-GTGCGGCCGTCTTCCAGTTGCTTTCCAGCAA 12023 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 |||| | ||| || || ||| ||||| || |||||||| |||||||| | || ||| Sbjct 12022 AGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGT 11963 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAA 283086 | || || || || || | ||| || || || || || |||||||| || | ||||| | Sbjct 11962 TGTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTCTTACCAGTGAGCGTCTTCA 11903 Query 283087 CGAATATCTGCATT 283100 | || || |||||| Sbjct 11902 CAAAGATTTGCATT 11889 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| ||||| || | ||| || || || || |||||||| Sbjct 11660 CCTCCACGAAGACGAAGGACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCTT 11601 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | ||||| || | ||| || || ||||| ||||| | || || ||| || Sbjct 11600 AGGGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGG 11541 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| || ||||| | || || | || ||||||||||||| ||||| Sbjct 11540 ATTCCTTCCTTGTCCTGAATCTTGGTCTTGACATTGTCAATAGTGTCCGAAGGCTCGACA 11481 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||||| ||||| ||||| | ||||| || || || |||||| Sbjct 11480 TCCAACGTGATAGTCTTTCCCGTGAGGGTCTTGACAAAGATTTGCATT 11433 >seq22 Length=300247 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || ||||| |||| ||| | ||| ||| || |||||||| ||||| Sbjct 203635 CCTCCACGAAGACGAAGCACCAAATGAAGAGTGGATTCCTTCTGGATGTTATAGTCGCTC 203576 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || || |||||||| | ||| || || ||||| || | ||| || || || ||| Sbjct 203575 AAAGTACGACCATCCTCCAATTGCTTTCCAGCAAATATAAGACGCTGCTGATCGGGAGGA 203516 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||||||||||||||| | || || |||| || || || || | || || Sbjct 203515 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTATCAATCGTATCAGATGGCTCTACA 203456 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAG 283080 || | |||||| | ||| || | ||||| Sbjct 203455 TCCAAAGTGATTG-CTTTCCAG-CAAAG 203430 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 282953 TTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGAT 283012 ||| || || ||||||||||| | ||| || ||| ||||| || |||||||| || || Sbjct 203445 TTGCTTTCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGAAT 203386 Query 283013 CTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACC 283072 ||| | || || | || || ||||| |||| ||||| || | ||||| ||||| || Sbjct 203385 CTTGGTCTTGACATTGTCAATGGTGTCGGAAGGCTCGACATCCAAGGTGATTGTCTTTCC 203326 Query 283073 CGTCAAAGTCTTAACGAATATCT 283095 ||||| || || ||||| |||| Sbjct 203325 GGTCAATGTTTTTACGAAAATCT 203303 >seq370 Length=42797 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 16797 TAGTATAGTGGCTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 16853 >seq350 Length=49339 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 15035 TAGTATAGTGGCTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 15091 >seq209 Length=96078 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 57002 TAGTATAGTGGCTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 56946 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 59323 TAGTATAGTGGCTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 59267 >seq98 Length=157384 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 90169 TAGTATAGTGGCTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 90113 >seq78 Length=173679 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 161105 TAGTATAGTGGCTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 161161 >seq56 Length=189842 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 107558 TAGTATAGTGGCTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 107614 >seq53 Length=198645 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 10118 TAGTATAGTGGCTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 10174 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 10283 TAGTATAGTGGCTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 10339 >seq44 Length=216553 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 186853 TAGTATAGTGGCTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 186909 >seq19 Length=295690 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 83204 TAGTATAGTGGCTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 83260 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||| ||||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 122905 TAGTATAGTGGCTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 122849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046724460930746