Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq386 138 8e-28 seq141 125 5e-24 seq456 116 3e-21 seq3 86.0 5e-12 >seq386 Length=39556 Score = 138 bits (152), Expect = 8e-28 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| ||||| || | | |||| |||||||||| ||||||||||||||||| Sbjct 11895 TTGCATTCCTCCTCTTAGACGGAGGACCAAGTGAAGCGTGGATTCCTTTTGGATGTTGTA 11836 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 || | || || || |||| ||||| ||||| || ||||| ||||| | |||||||| Sbjct 11835 GTCACTCAAGGTGCGGC-CGTCTTCCAGTTGCTTTCCAGCAAAAATCAATCTCTGCTGAT 11777 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGG 44282 | | || | |||||||| ||| ||||| ||||| | | ||||| || | | Sbjct 11776 CAGGTGGGATTCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTATCAATGGTATCAGACG 11717 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| || |||| || || ||||| || ||||| |||||||| ||||||||||| Sbjct 11716 GTTCAACGTCCAGTGTGATGGTCTTACCAGTGAGTGTCTTCACAAAGATTTGCAT 11662 Score = 138 bits (152), Expect = 8e-28 Identities = 158/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| |||||| || ||||||||||||||||| || | || || || |||| || Sbjct 12098 ACCAAGTGAAGGGTAGATTCCTTTTGGATGTTGTAGTCACTCAAGGTGCGGC-CGTCTTC 12040 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||| ||||| || |||||||| | |||||||||||| | ||| | |||||||| ||| Sbjct 12039 CAGTTGCTTTCCAGCAAAGATAAGACGCTGCTGATCAGGAGGAATTCCTTCCTTGTCCTG 11980 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | ||||| || | | |||||| |||| ||||| ||||| Sbjct 11979 GATCTTGGTCTTCACGTTGTCAATGGTATCAGATGGTTCCACATCCAGTGTAATAGTCTT 11920 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| |||||||| ||||||||||| Sbjct 11919 ACCAGTGAGCGTCTTCACAAAGATTTGCAT 11890 Score = 113 bits (124), Expect = 3e-20 Identities = 155/213 (73%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCT--CGTCGT 44186 |||||||| || ||| |||||| || || ||||| ||| || || || | || | Sbjct 11642 ACCAGGTGCAGAGTGGACTCCTTCTGAATATTGTAGTCGCTTAG--GGTCCTTCCATCTT 11585 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| ||||| || ||||| ||||| | ||||||||| | || | |||||||| ||| Sbjct 11584 CCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGATCAGGTGGGATTCCTTCCTTGTCCT 11525 Query 44247 TTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGT 44304 ||||| ||| || ||| | || ||||| | | || || |||| ||| || || Sbjct 11524 GAATCTTGGTCTTGACATTGT--CAATAGTGTCCGAAGGCTCGACATCCAACGTGATAGT 11467 Query 44305 CTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||||||| || ||||||||||| Sbjct 11466 CTTTCCCGTGAGGGTCTTGACAAAGATTTGCAT 11434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || |||||| || | || | | ||| | |||||| || ||||||||||| ||||| Sbjct 11439 TTGCATTCCTCCACGAAGACGAAGCACTAAGTGAAGAGTAGATTCCTTTTGGATATTGTA 11380 Query 44164 ATCGGCGAGTTGGCGCT--CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGA 44221 ||| || || || | || |||| ||||| || ||||| ||||| | ||||||| Sbjct 11379 GTCGCTTAG--GGTCCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTCTGCTGA 11322 Query 44222 TCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGG 44279 || | ||| | |||||||| ||| ||||| ||| || ||| | |||||||| | Sbjct 11321 TCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGTCTTGACATTGT--CAATGGTGTCCG 11264 Query 44280 CGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTG 44334 | || || |||| ||| || ||||| || || | || || ||||| || || Sbjct 11263 AAGGCTCGACATCCAACGTGATTGTCTTGCCGGTCAAAGTTTTTACGAAAATCTG 11209 >seq141 Length=126064 Score = 125 bits (138), Expect = 5e-24 Identities = 171/237 (72%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| ||||||| || || |||| || || ||| |||||||||||||||||||| Sbjct 117155 TCCTCCTCTCAATCGCAGGACCAAATGCAGGGTGGATTCCTTTTGGATGTTGTAATCACT 117096 Query 44170 --GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 ||||| || | || |||| ||||| ||||||||||| | ||| |||||||| | Sbjct 117095 CAGAGTT--CGACCATCCTCCAATTGCTTTCCGGCAAAGATAAGACGTTGCTGATCCGGT 117038 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | |||||||| ||| ||||| ||| | | | || ||||| | | || Sbjct 117037 GGGATTCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGATGGCTCG 116978 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGA 44344 || || | || || |||||||| ||||||||||| ||||||||||||||| || || Sbjct 116977 ACATCGAGAGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATTTGCATGGTGAGA 116921 >seq456 Length=31050 Score = 116 bits (128), Expect = 3e-21 Identities = 152/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| ||| ||||| ||||||||||| ||| || ||| | || || Sbjct 6842 CACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTC 6783 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||||||||| | ||||||||| || | ||| | |||||||| ||| Sbjct 6782 CAATTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTG 6723 Query 44248 TATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| | || | ||| | |||||||||| | |||||| |||| || || |||| Sbjct 6722 GATCTT-GGTTTTGACGTTGTCGATGGTGTCGGACGGTTCCACGTCCAGGGTGATGGTCT 6664 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTG 44334 | || || |||||||| || || || || Sbjct 6663 TGCCAGTCAGGGTCTTTACAAAAATCTG 6636 >seq3 Length=497493 Score = 86.0 bits (94), Expect = 5e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 |||| |||||| ||| ||||||||||||||||||||| | || || || | || || Sbjct 135373 ACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAATCGCTCAAGGTG-CGTCCATCTTC 135315 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||||||||| | ||| || ||||| | ||| | |||||||| ||| Sbjct 135314 CAATTGCTTTCCGGCAAAGATAAGACGTTGTTGATCAGGAGGGATTCCTTCCTTGTCCTG 135255 Query 44248 TATCTT 44253 ||||| Sbjct 135254 GATCTT 135249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359985578266083