Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudo- nitzschia_20multistriata_20[genbank_20GCA_5F900005105.1_202017-04-25] 1,099 sequences; 55,157,528 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq141 165 2e-35 seq456 145 2e-29 seq3 131 4e-25 seq386 127 5e-24 seq22 105 2e-17 >seq141 Length=126064 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| || ||||| ||||| || || || ||| Sbjct 116931 CAAATCTTCGTCAAGACCCTCACCGGAAAGACCATCACTCTCGATGTCGAGCCATCGGAC 116990 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| |||||||| ||||||||||| ||||| |||||| Sbjct 116991 ACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCGGATCAGCAA 117050 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| |||||||| || | || ||||| | ||||| ||||| ||| || Sbjct 117051 CGTCTTATCTTTGCCGGAAAGCAATTGGAGGATGGTCGAACTCTGAGTGATTACAACATC 117110 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || |||||| | || || || | ||| Sbjct 117111 CAAAAGGAATCCACCCTGCATTTGGTCCTGCGATTGAGA 117149 >seq456 Length=31050 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || || || || |||||||| || |||||| || ||| Sbjct 6636 CAGATTTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGACGTGGAACCGTCCGAC 6695 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||||||| ||||| |||||||| |||||||| ||||| |||||||| Sbjct 6696 ACCATCGACAACGTCAAAACCAAGATCCAGGACAAGGAAGGAATTCCTCCCGACCAGCAG 6755 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| || | || ||||| | || || ||| || ||| || Sbjct 6756 CGTCTCATCTTTGCCGGAAAGCAATTGGAGGATGGCCGCACCCTGAGCGACTACAACATC 6815 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || ||||| || || || |||| Sbjct 6816 CAGAAGGAATCCACCCTTCA-CTTG 6839 >seq3 Length=497493 Score = 131 bits (144), Expect = 4e-25 Identities = 143/186 (77%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAA 178006 ||| || || ||||| || || || || || ||||| || || |||||||| || Sbjct 135191 AGGTAAGACCATCACTCTTGATGTCGAGCCATCGGACACTATTGACAACGTCAAGACCAA 135250 Query 178007 GATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACA 178066 ||| |||||||| |||||||||||||| || || ||||| |||||||| |||||||| || Sbjct 135251 GATCCAGGACAAGGAAGGAATCCCTCCTGATCAACAACGTCTTATCTTTGCCGGAAAGCA 135310 Query 178067 GCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 | ||||||||| | || |||| |||||| ||| ||||||| ||||| || || || | Sbjct 135311 ATTGGAAGATGGACGCAC-CTTGAGCGATTACAACATCCAAAAGGAATCCACCCTTCA-C 135368 Query 178126 TTGTTT 178131 ||| || Sbjct 135369 TTGGTT 135374 >seq386 Length=39556 Score = 127 bits (140), Expect = 5e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 177921 CTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA 177980 || || |||||||| |||||| | || || || || ||||| | || || || || Sbjct 11206 CTACAGATTTTCGTAAAAACTTTGACCGGCAAGACAATCACGTTGGATGTCGAGCCTTCG 11265 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| || || ||||| ||||| |||||||| |||||||| |||||||| ||| Sbjct 11266 GACACCATTGACAATGTCAAGACCAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAG 11325 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || | || || || ||||| || | |||||||||||||| || ||| || || Sbjct 11326 CAGAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAAT 11385 Query 178101 GTCCAAAAAGAATCAACACTGCA 178123 ||||||| ||||| || || || Sbjct 11386 ATCCAAAAGGAATCTACTCTTCA 11408 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| ||||| || ||||| | || || || || ||| Sbjct 11437 CAAATCTTTGTCAAGACCCTCACGGGAAAGACTATCACGTTGGATGTCGAGCCTTCGGAC 11496 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||||||||| ||||||||||| || || ||||| Sbjct 11497 ACTATTGACAATGTCAAGACCAAGATTCAGGACAAGGAAGGAATCCCACCTGATCAGCAG 11556 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || ||||| || | |||||||||||||| || ||| || || | Sbjct 11557 AGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGGACCCTAAGCGACTACAATATT 11616 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 11617 CAGAAGGAGTCCACTCTGCACCTGGT 11642 Score = 113 bits (124), Expect = 1e-19 Identities = 151/206 (73%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||| || ||||| || || || ||||| || || || ||| || || Sbjct 11665 CAAATCTTTGTGAAGACACTCACTGGTAAGACCATCACACTGGACGTTGAACCGTCTGAT 11724 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| |||||||| ||||||||||| || || ||||| Sbjct 11725 ACCATTGATAACGTGAAGACCAAGATCCAGGACAAGGAAGGAATCCCACCTGATCAGCAG 11784 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || || ||||| || || ||||| || | || |||| || || ||| | Sbjct 11785 AGATTGATTTTTGCTGGAAAGCAACTGGAAGACGGCCGCAC-CTTGAGTGACTACAACAT 11843 Query 178103 CCAAAAAGAATCAACACTGCATCTTG 178128 |||||| ||||| || || || |||| Sbjct 11844 CCAAAAGGAATCCACGCTTCA-CTTG 11868 >seq22 Length=300247 Score = 105 bits (116), Expect = 2e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 177921 CTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA 177980 ||| | |||||||| ||||| | || ||||| || |||||| | || || || || Sbjct 203299 CTCTAGATTTTCGTAAAAACATTGACCGGAAAGACAATCACCTTGGATGTCGAGCCTTCC 203358 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| || || ||||| |||||||||||||| |||||||| ||||| || ||| Sbjct 203359 GACACCATTGACAATGTCAAGACCAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAG 203418 Query 178041 CAACGACTTATCTTCGCCGGAAAACA 178066 ||| || | ||||| || ||||| || Sbjct 203419 CAAAGATTGATCTTTGCTGGAAAGCA 203444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203714250336206