Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq79 113 1e-19 seq7057 100 6e-16 seq691 91.5 3e-13 seq13236 86.0 1e-11 >seq79 Length=34262 Score = 113 bits (124), Expect = 1e-19 Identities = 186/268 (69%), Gaps = 3/268 (1%) Strand=Plus/Plus Query 319404 CACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGAT 319463 ||| |||| || || ||||||||||| |||||||||| | || ||||| || || Sbjct 20320 CACAAACTTTGAAAGGTTTCCCTTGTAGATCTTCAGCTTACG---AGTCTCGTAGTGAAT 20376 Query 319464 AATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAAC 319523 ||| |||||| || | ||| | ||| || |||||||| ||||| || | ||| || Sbjct 20377 AATGTTGGTGCACACCGTGTCCAAGAAGCCAGAGTCGTGGGACACCATGATTGACGTCAC 20436 Query 319524 GTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTT 319583 | | | | | ||||||| | ||||||| |||||| ||| | ||||| Sbjct 20437 ATTCGTCAAACTCGTCAGGTAGTTCTCCAACCACGCCACGTTCTTCACGTCCAAGTGGTT 20496 Query 319584 GGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAG 319643 |||||||| || ||||||| | | || ||| | ||||| ||||| || || | | Sbjct 20497 CGTCGGCTCATCGAGAAGCAAGATGTCAGCCTTCTGAAGCATGGCACGGGCCAGCTCCAA 20556 Query 319644 TTTCATTTTCCACCCTCCGGAAAGAGTG 319671 |||||| ||||| || || ||||||||| Sbjct 20557 TTTCATCTTCCAACCACCAGAAAGAGTG 20584 >seq7057 Length=2016 Score = 100 bits (110), Expect = 6e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| ||||| |||||| ||||||||||| |||||| Sbjct 1955 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCCTGTGGTCGTGGGCTCGAGC 1896 Query 165770 CCCACGATGG 165779 |||||| ||| Sbjct 1895 CCCACGGTGG 1886 >seq691 Length=12351 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 282632 TGCATCGCGAACGTTCAGCAACTTACCGCGGAGAGGAAAAACACCATATCTCTCGCGACC 282691 ||| |||||||||||||||| |||||| || | ||||| || ||||| || | || Sbjct 10340 TGCTTCGCGAACGTTCAGCATCTTACCTCGCAACGGAAAGACGCCATAGTAGTCTCTGCC 10399 Query 282692 GACCACGGACAGTCCTGCAATTGCAAGTGTTGCTGCGGAATCTCCCTCCGTCAAGATGAG 282751 ||| ||||| || || ||| |||| ||| ||||||||||| ||||| | ||| || Sbjct 10400 GACGACGGAAAGACCGCCAACAGCAACAGTTTTGGCGGAATCTCCTTCCGTTACGATCAG 10459 Query 282752 AGTACACATCTTACTATGATTTGTGCCCGCCCATGCAGCATCGTTTAGTTTAGGGATGCC 282811 ||| || |||||| | ||| || || ||||| | |||||| |||||||| Sbjct 10460 AGTGCAATCCTTACTCTTCGCTGTACCAGCGTGATTGGCATCATCTAGTTTGGGGATGCC 10519 >seq13236 Length=1080 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165711 CCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCC 165770 ||||||||||||||| |||||||||| | ||||||| | ||||||||||||||||||| Sbjct 215 CCCGTCTAGCTCAGTTGGTAGAGCGCTGGCCTTTTAAGCCAGTGGTCGTGGGTTCGAGCC 274 Query 165771 CCACG 165775 ||||| Sbjct 275 CCACG 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057342326783570