Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1997 127 2e-24 >seq1997 Length=5797 Score = 127 bits (140), Expect = 2e-24 Identities = 556/870 (64%), Gaps = 36/870 (4%) Strand=Plus/Plus Query 16687 AACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAA 16746 ||| | ||||||||| || || ||||| |||| || ||| || | ||||| |||||||| Sbjct 1839 AACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAAAGAGATCATATCCATAAAATCAAA 1898 Query 16747 AGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTAC 16806 ||||| | || | | | | | | | || | ||| | | |||||| || | ||| Sbjct 1899 CGGATTCGCAGAGTTATACACTCTTGCACATCCTAATTCTACTAATAATCTGTCGGTTAC 1958 Query 16807 AAATTCTATATATTGGCACATTAA-TTCGCAGTTCATTCCTATAAGACGTACCGGAAGAG 16865 |||||||| ||||| |||||| || || ||||||||| || | | |||||||||| Sbjct 1959 AAATTCTAAGTATTGTGTCATTAAGTTTGC-GTTCATTCCAATTAAGCTCACCGGAAGAG 2017 Query 16866 CTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT---CCTTAATAATACTAGCAACTC 16922 ||| || | |||| | || ||| ||| || | || || | || | || || Sbjct 2018 ATTCTGTTATAAATTCTCTTTCAATATCAAGAGCCTGTACCAGGAT--TTCT-GTAATTC 2074 Query 16923 GTTCCTCGGACGGTGTATGTTTAAGATGT-----TTAAACATCAGACATGCGAAATCGCA 16977 | | || | ||| | | || || || || | ||| ||||| || Sbjct 2075 TGGCTTTTGAAACTTTAT--TAACGAGGTGGTGGTTGTGCAAATGCACTGCAAAATCACA 2132 Query 16978 ATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCC 17037 ||||| || || || | || | ||| || ||||| || | || |||||| ||| Sbjct 2133 ATGTACGCCTTCATCACGTGAAATCAATTCATTTGAAAAAGTAAGACCCGGCATCAATCC 2192 Query 17038 TCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGA 17097 ||||| || |||||| | || | ||| | || || || || || || || |||| Sbjct 2193 ACGTTTTTTCAACCAATAGATAGAACAGAATGCTCCTGAGAAAAAGATTCCTTCTACGGC 2252 Query 17098 TGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCAC 17157 |||||| || || | || ||| || | | || || ||||||||| | Sbjct 2253 TGCAAAAGCAATCAGTCTTTCAGCAAATGAATCGGATTC------AATCCATTTTAAAGC 2306 Query 17158 CCACTCGGCTTTTTGCTTTAT-----GCAATCCATCGTTTCTATGGCCTTAAATAATTTC 17212 ||| || ||||||| ||| || | ||| | ||| | || | || | | Sbjct 2307 CCAGTCCGCTTTTTTCTTAATTGCCGGAAATAC-----TTCCAAAGCGTGGAAAAGCTGG 2361 Query 17213 TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272 || ||||| | || ||| ||||||||| || || || || ||||| ||| Sbjct 2362 TCCTTTTCTGCTTCATCTTTTACATACGTATCAATCAGAAGAGAATAGGTTTCGCTGTGG 2421 Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 || |||||||| || || |||||||| || || ||||||| ||||||||| Sbjct 2422 ATATTCTCCATCATGATTTGGAATCCGTAGAAAAATTTAGCTTCCGGATATTGAACTTCG 2481 Query 17333 ACGTAGAATCGT-TCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || || | || || || ||||| ||||| || ||||| || || ||||| || Sbjct 2482 TT-TACAAAATTCTCTGCCAGGTTTTCATTCACAATACCGTCTGATGCAGCAAAAAAAGC 2540 Query 17392 CAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAG---AACGCGCCAGTCCTTTAA 17448 || ||||| || || |||||||| || || | || | | |||||| ||| Sbjct 2541 TAAAATATGTTTGATAAAATATTTCTCATCATTATTCAGCTTATTGTTCCAGTCTGATAA 2600 Query 17449 ATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACAT 17508 ||| | | | ||| | |||||||| ||||||||||| || | || |||||| Sbjct 2601 ATCCTGGTGCAAATCAATTTCTTCGGCAGTCCAAAAACTTGCTTCCATTTTCTTATACCA 2660 Query 17509 ATTCCAAATATCATTGTATTGTATGGGGAA 17538 | ||||||||||| || || ||| ||||| Sbjct 2661 CTCCCAAATATCATGGTGTTTTATAGGGAA 2690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517315686836520