Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1997 168 7e-37 >seq1997 Length=5797 Score = 168 bits (186), Expect = 7e-37 Identities = 566/868 (65%), Gaps = 31/868 (4%) Strand=Plus/Plus Query 15925 AACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAA 15984 ||| | |||||||||||| || ||||| |||| |||||| || | |||||||||||||| Sbjct 1839 AACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTAAAGAGATCATATCCATAAAATCAAA 1898 Query 15985 GGGATTAGTAGCTGAAAATA-TCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTA 16043 ||||| | || | | | |||| | | || | ||| | |||||| || | || Sbjct 1899 CGGATTCGCAGAGTTATACACTCTTGCAC-ATCCTAATTCTACTAATAATCTGTCGGTTA 1957 Query 16044 CAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAG 16103 ||||||||| ||||| |||||||| || ||||| || | | |||||||||| Sbjct 1958 CAAATTCTAAGTATTGTGTCATTAAGTTTGCGTTCATTCCAATTAAGCTCACCGGAAGAG 2017 Query 16104 CTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTG 16163 || ||||| ||||| | ||| || ||| || | | | ||| || || || | Sbjct 2018 ATTCTGTTATAAATTCTCTTTCAATATCAAGAGCCTGTACCAGGATTTCTGTAATTCTGG 2077 Query 16164 TTTCAGACGGTGTAT------GGTTTAGGTGTTTAAACATTAGACAC-GCGAAGTCGCAA 16216 || || | ||| ||| |||| || || | ||| || || || ||| Sbjct 2078 CTTTTGAAACTTTATTAACGAGGT---GGTGGTTGTGCAAATG-CACTGCAAAATCACAA 2133 Query 16217 TGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCT 16276 |||| ||||| || | || | ||| || |||||||| | || ||||| ||| Sbjct 2134 TGTACGCCTTCATCACGTGAAATCAATTCATTTGAAAAAGTAAGACCCGGCATCAATCCA 2193 Query 16277 CGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGAT 16336 ||||| || ||||| | || | | |||| || || || || || || || || | | Sbjct 2194 CGTTTTTTCAACCAATAGATAGAACAGAATGCTCCTGAGAAAAAGATTCCTTCTACGGCT 2253 Query 16337 GCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACC 16396 |||||||| || | || ||| || | | | | || | |||||||| || Sbjct 2254 GCAAAAGCAATCAGTCTTTCAGCAAATGAATCGGATTCA------ATCCATTTTAAAGCC 2307 Query 16397 CATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTT 16456 || || ||||||| || || | ||| | || | || | | || ||| Sbjct 2308 CAGTCCGCTTTTTTCTTAATTGCCGGAAATACTTCCAAAGCGTGGAAAAGCTGGTCCTTT 2367 Query 16457 TCCTGAAT-ATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTT 16515 || || | ||| ||| ||||||||||||||| | | || |||| ||| || || Sbjct 2368 TC-TGCTTCATCTTTTACATACGTATCAATCAGAAGAGAATAGGTTTCGCTGTGGATATT 2426 Query 16516 CTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCC---AC 16572 ||| || || || ||||| ||||| || ||| |||| ||| ||||| || Sbjct 2427 CTCCATCATGATTTGGAATCCGTAGAAAAATTTAGCTTCCGGATATTGAACTTCGTTTAC 2486 Query 16573 GTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAA 16632 ||| || || |||||||| |||||||| |||||||| |||||||||||| || || Sbjct 2487 A-AAATTC--TCTGCCAGGTTTTCATTCACAATACCGTCTGATGCAGCAAAAAAAGCTAA 2543 Query 16633 TATGTGCTTAATGAAATATTTTTCGTCAGATGTAAG---AATATGCCAATCTTTTAAATC 16689 || || || || |||||||| || ||| | || | | | ||| ||| |||||| Sbjct 2544 AATATGTTTGATAAAATATTTCTCATCATTATTCAGCTTATTGTTCCAGTCTGATAAATC 2603 Query 16690 TTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTT 16749 | | | ||| | |||||| | |||||||| || || | || |||||| | Sbjct 2604 CTGGTGCAAATCAATTTCTTCGGCAGTCCAAAAACTTGCTTCCATTTTCTTATACCACTC 2663 Query 16750 CCAAATATCATTGTATTGTAT-GGGAAA 16776 ||||||||||| || || ||| |||||| Sbjct 2664 CCAAATATCATGGTGTTTTATAGGGAAA 2691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511187210545480