Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq1131 251 1e-62 seq8149 201 2e-47 seq29522 150 4e-32 seq8333 87.8 4e-13 >seq1131 Length=8710 Score = 251 bits (278), Expect = 1e-62 Identities = 814/1240 (66%), Gaps = 43/1240 (3%) Strand=Plus/Plus Query 2286 ACGCCGAGGCCGAGGCCGGTTGCGTCAATGCCGATGTATTCGACGCTGTATTTCTCGGTC 2345 ||||| | || || ||| | | ||| ||||||||||| ||| || | |||| || Sbjct 4153 ACGCCCTGCCCCAGCCCGCTGGTGTCGATGCCGATGTAGGTCACGTTGAACTTCTGCGTG 4212 Query 2346 AGTTTGCGGATGCCATCTGCCTGCGCGGCAAAGTCCATGCCCTTCCACTGGTGGCGCTCC 2405 | ||||||| | ||||||||| | |||||| ||||| |||| || || | | Sbjct 4213 ATCGCGCGGATGGCCTCTGCCTGCTGCTCGAAGTCCGCCCCCTTGAACTGCTGCCGGTGC 4272 Query 2406 AGCATGCGGAACTTGCCACCAGAAACCACCGGCGGCGCGAGCACGACGCACCCGGCGCTG 2465 |||| ||||||||||| || | || |||||| || | ||| || || || ||| | Sbjct 4273 AGCAGCCGGAACTTGCCGCCCGGCGCCCGCGGCGGTGCAATCACCAC-CA-GCGCCGCAG 4330 Query 2466 --TCGCCAGTGTGTGACGGGTCGTAGCCAATCCAGACGGGGCGAGAGC-CGAACGGATGG 2522 ||||| ||||| || |||||||| || | ||| || || || || || |||| | Sbjct 4331 CATCGCCGGTGTGCGATGGGTCGTACCCCACCCACAC-CGGAAAGTGCGCGTACGGCCGC 4389 Query 2523 TCGGCGAACGGGGCGAAGTCCTCCCATTCTTCCATCACGTCGACCATGCAGCGCTGCAGC 2582 ||| ||||| | | ||| |||| | ||| ||| |||||||||| ||||| Sbjct 4390 GTGGCAAACGGCTTGCAATCCGCCCACGCCTCCCAGCTGTCCACCATGCAGCCCTGCATT 4449 Query 2583 TCCTCGAACGGGAATACCGACGCTTTATCGTCGACAAACTCGCACATAAACAGGTTTTTA 2642 |||| || || ||| | || | ||||||| ||||||||||| ||||||| Sbjct 4450 TCCTTGAGCGTGAACAGGCTAGCGCTGTCGTCGATGAACTCGCACATGTACAGGTTGGCG 4509 Query 2643 AAGTCCTCATCACTGTTTTCGCGTTTGAGTTGGTCGAGGTCGAACAGGGTGCAGCCACCG 2702 || || || ||| |||| || | ||||| |||||||||| ||||||| | | Sbjct 4510 AACTCTTCCGGGCTGCTTTCTTCCCGCAGCTCGTCGATGTCGAACAGGTTGCAGCC-CAG 4568 Query 2703 GCAAG-GGCGTCCTCAATGGTGACAATCTGCCGCCACTGGCCATCGTCGCAGAGCTGGCC 2761 || | |||||||| || || || | | ||||||| || |||| | | | | ||| Sbjct 4569 GCGTGCCGCGTCCTCGATCGTCACCACGTCGCGCCACTTGCGATCGGCCCCGCGGATGCC 4628 Query 2762 ACCGGCGAGCGCGCGGTGACTGATGTCAATTTCGATGCGGTCGGCAATACGGCTGCGCCC 2821 ||| ||||| ||| || | ||| || |||| ||| | | |||||| || Sbjct 4629 GCCGCGCAGCGCTGCGTGGCTCACGTCGATGGTGATGGCCTCGCCCTT---GCTGCGGCC 4685 Query 2822 CTTGTTGAACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTTGAGGGTGT 2881 |||||| | | ||| |||||| ||||| || | |||| || | || || || Sbjct 4686 TTTGTTGCGCTCCGTGCCGTTCCAGAACGGATACGCCTCATGCGACATGGCCGACGGGGT 4745 Query 2882 CGAAAAGTAGGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGAGGCGACTTTGCGCAG 2941 || ||||| || |||| |||||| |||| |||||| ||| ||| || ||| || Sbjct 4746 GGAGAAGTACGTCTTGCGCCAATGCTTGTGCGTCGCCATGGCCGCGGCCACCTTGTTGAG 4805 Query 2942 CTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTG 3001 || |||| || | ||| || | ||||||| || | ||||||| | | | ||| Sbjct 4806 CTGGCGAAAGCCCGACACCCAAAAGAACTCATCGAAGTAGAAGTCGCCGCTGCGCCCCTG 4865 Query 3002 AGCCGTGTTGGAGTTGGTACCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCAATGACAAT 3061 ||||| || | ||||| || | ||| ||||| || |||| | | | | || || Sbjct 4866 CGCCGTCTTCGCATTGGTGCCCAAAAAGTGCAGCTCCGCACCGT--TCGAC-AGCACGAT 4922 Query 3062 CGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGCGCAAA---CTGTATG-ATGTATTCGC 3117 ||||||||| |||| || ||| | ||||| | ||||| | | ||| | || || Sbjct 4923 AGGGTCGCCGCTCAGCTCCACGCCCACCAGCCCGGCAAAGGCCAGCATGTACGTCTT--- 4979 Query 3118 GGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGA 3177 |||| || ||||||| || || || || |||||||| || | || | ||| Sbjct 4980 -GAACTGGTGCGCCTGCGCCTTTGATGCAGAAAGGAAAATCTGATTGCGCCCCTCCGTGA 5038 Query 3178 GTGCTCGCAGCAGTGCCTCACGGGAAAAATAGAACGTCGCGCCAATCTGGCGGGATTTGA 3237 || || | ||| ||||| |||| ||| || | || || || ||||| || || || | Sbjct 5039 TGGCGCGTATCAGCGCCTCGCGGGCAAAGTACCAAGTGGCCCCGATCTGCCGCGACTTCA 5098 Query 3238 GAA--TGTCGCGAATACGGTGTGCCAGTCCTGCGC--GGTACCACTGCAACTGGTACTCG 3293 | | | |||| | || | | || |||||| |||||| | ||| | Sbjct 5099 GCAGCAGCCGCG--TGCGCT----CCGT-CTGCGCCTCCCACCACTTCGCGGCATACCCA 5151 Query 3294 AAAGACTGGTCGAAAAATAATTCCTCCAGCTTTTCGATAGCCTCGTCGCTGAAAAAATTC 3353 || ||| ||| || | ||| |||||| ||||| ||| ||| |||| || Sbjct 5152 AAGTTCTGCTCGTGGAAGATCTCCAGCAGCTTCTCGATCTGCTCTTCGGTGAAGTGGTTG 5211 Query 3354 TTTTTCGGCTT---CTTGCGCTCACCCTTGTTGCGGTTGGCGACGTTGGGGTTAAGGTCG 3410 |||||| | |||| || || |||||| ||| | ||||||||| | |||| Sbjct 5212 CGCTTCGGCGTGCGCTTGGGC---GCCGCGTTGCGCGCGGCAATGTTGGGGTTCAAGTCG 5268 Query 3411 GCCTCGTTGCCGGT-CTGGCT-GTAGCGGTTAACGCGTGCCAGTCGTTCAATCTGCCGCC 3468 | || ||||| || || || |||||| | ||||| ||| || || | |||||| | Sbjct 5269 CCTTCCTTGCCCGTGCT--CTGGTAGCGCTCCACGCGCGCCGTGCGCTCCAGCTGCCGGC 5326 Query 3469 CGAGCAGGTCAATCTCTTTGAAGTCACCGCCTGACTTTTG 3508 | |||||||| ||||| |||||||| ||||| | ||| || Sbjct 5327 CCAGCAGGTCGATCTCCTTGAAGTCGCCGCCCGTCTTCTG 5366 Score = 167 bits (184), Expect = 5e-37 Identities = 244/345 (71%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 376 CGGTACGCGGTGCGCGTCCATCAGGTCGGCGGCGCTGGCTTTCTTGATGTTGAAAAAGTC 435 ||| |||||||| ||| ||| || |||||| ||||| ||||||||| | ||||| Sbjct 2965 CGGCACGCGGTGGGCGGCCAGCACGTCGGCCATGCTGGTGTTCTTGATGGCGGCGAAGTC 3024 Query 436 ATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTAATGCCGTCCGGTTTTCCATTGGG 495 || || | ||||| |||||| | || | | || | |||||||| || || || Sbjct 3025 GTCTTTGGCGGCGATCTCGCTGATGGGGATCAGCTTCAAGCCGTCCGCCTTGCCGCCAGG 3084 Query 496 AGCGTAGAAAAACAGGTTTTTAAAATTGCCGAGCCCTTTCGAGTTGCGCATCGCCTCGCG 555 |||| | |||||||| || ||||| |||| || || ||||||| | |||||| Sbjct 3085 CGCGTGCAGGAACAGGTTGCGGAAGTTGCCCGGCCCCTTGGACTTGCGCAGCTGCTCGCG 3144 Query 556 CAGCGATTCGACGTCGGTCGCGCTCTGCGCCGGGTCGGTCACATACATGATGTAACCCGC 615 ||||| || |||||||| | |||| || | |||| ||| ||||||||| | || || Sbjct 3145 CAGCGTGTCCACGTCGGTGGTGCTCACCGTGGCGTCGCTCAGGTACATGATGAAGCCGGC 3204 Query 616 ATGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTTGCGGATTCATTCAGCCAGGC 675 ||| |||||||| ||| ||| |||||| |||| || |||| || ||||| ||| Sbjct 3205 ATGGCTGCCGTTCTCGTAGTACCGGCGGCGAAACATGGTGGCGGCCTCGTTCAGGTGGGC 3264 Query 676 GGAATTAAGCGCGCTGAGATATTCGGGCAGGCCGTAAATCTCCTG 720 || | | |||||| || || || |||| ||| || | |||||| Sbjct 3265 CGACTGCAACGCGCTCAGGTACTCCGGCACGCCATACACCTCCTG 3309 Score = 95.1 bits (104), Expect = 2e-15 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 5510 GACCCGAAACTCGTTGCCATCGTTGGCCGTAAGCTGCTGGCCGACAAATATTTTCCGCTG 5569 ||||| | ||||| |||||| | ||||| ||| || ||||| | || |||||| Sbjct 7432 GACCCCGACCTCGTCGCCATCCTCGGCCGCGGGCTCATGCATGACAAGTTCTTCCCGCTG 7491 Query 5570 GTCAACAAACAGCAGGAAAACACCGAGTCGCTCGCGGCGGATATCATCATCAGCCAGAAG 5629 |||||| || ||||| |||||| ||||||| | ||| | ||||| || ||| Sbjct 7492 GTCAACCAAGAGCAGCCCGCCACCGAAACGCTCGCCACCGATCTGGTCATCTCGCAAAAG 7551 Query 5630 CGCATCGGCAACCTGCCAGCCGTACGTGTGCCGTACTTCCCGGCGAACGC--GGTGTTCG 5687 ||| | ||| ||||| ||||| ||||| | |||||| |||| || |||| ||| Sbjct 7552 CGCGTAGGCGGCCTGCGCGCCGTCACCGTGCCCTTCTTCCC--CGAAGGCAAGGTGCTCG 7609 Query 5688 TGACCACGCTGGAAAACCTCTCTATCTA 5715 | ||||||||| ||||| || ||||| Sbjct 7610 TCACCACGCTGTCCAACCTGTCCATCTA 7637 >seq8149 Length=1767 Score = 201 bits (222), Expect = 2e-47 Identities = 365/524 (70%), Gaps = 10/524 (2%) Strand=Plus/Minus Query 14804 GCACTCGGTCTGCGTGCCTACATCGACCAGACTATCGGCTGGCACAAAACGCTGTCTAAC 14863 || || || ||||| || |||||||||| ||||||||||| |||||||| ||| Sbjct 1625 GCCCTGGGCCTGCGCGCGCGCATCGACCAGGAGCAGGGCTGGCACAAGACGCTGTCCAAC 1566 Query 14864 GTTGGCGT-GCAGGGCGTTACCGGCATCAGCGCCTCA-GTCTTTTGGGATTTGCAGGCAT 14921 || | ||| | ||||||| |||||| ||| | || |||||| |||| Sbjct 1565 GT-GCCGTTGTCGGGCGTTCTGGGCATCT-CGCGCGATGTGCATTGGGACCTGCAAAGCC 1508 Query 14922 CCGGCACAGATGCTGACCTGCTCAACGAGGCCGGAGTCACCACGCTGGTGCGCAAGGATG 14981 ||| || || || | | | |||||| ||||||| ||||||||||| | | | | | Sbjct 1507 CCGATACCGAGGCCGGCATCCTCAACCAGGCCGGCATCACCACGCTGATCCAGAGCCAGG 1448 Query 14982 GTTTCCGTTTTTGGGGGAACCGCACATGCTCTGATGACCCGCTTTTCCTGTTTGAGAACT 15041 | ||| || ||||| ||||| ||| | || | ||| |||| || ||| | Sbjct 1447 GCCACCGCTTCTGGGGCTCGCGCACCTGCACGGACAGCGAGCTGTTCCGCTTCGAGTCCA 1388 Query 15042 ACACCCGAACCGCGCAGGTGCTGGCCGACACAATGGCTGAGGCGCACATGTGGGCGGTCG 15101 | || ||||||||||||||||||||||| ||||| |||||||| | ||||| || | Sbjct 1387 GCGTGCGCACCGCGCAGGTGCTGGCCGACACCATGGCCGAGGCGCATTTCTGGGCCGTGG 1328 Query 15102 ATAAGCCCAT-CACCGCATCGCTCATCCGTGACATTGTCGACGGCATTAACGCCAAATTC 15160 | |||||||| |||| || | || || ||||| | || ||||| ||| |||| ||| Sbjct 1327 ACAAGCCCATGCACCCCAGC-CTGGTCAAGGACATCCTGGAAGGCATCAACACCAAGTTC 1269 Query 15161 CGCGAGCTGAAATCAAATGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAGGAATCG 15220 ||||| ||||| | ||||||||| ||||||| | ||||| |||||| || | Sbjct 1268 CGCGAACTGAAGGCCCTGGGCTACATCCTGGACGGCAAGGCCTGGTACGACGA--AACGG 1211 Query 15221 --AACGATAAGGAAACCCTCAAGGCCGGGAAACTGTATATCGACTACGACTATACACCGG 15278 ||||| | | || ||||||||||| || ||| | ||||||||||| || || | Sbjct 1210 TCAACGAGACCGCCACGCTCAAGGCCGGCAAGCTGGTGCTGGACTACGACTACACGCCCG 1151 Query 15279 TTCCCCCACTGGAAAGCCTGACCCTGCGCCAGCGTATCACCGAT 15322 | || || ||||| |||| | |||||||| ||||||||| Sbjct 1150 TGCCTCCGCTGGAGGACCTGGGTTTTCGCCAGCGCATCACCGAT 1107 >seq29522 Length=371 Score = 150 bits (166), Expect = 4e-32 Identities = 94/101 (93%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 20930 AACAAAAAGGCCACTCGAGAGAGTGGCCTAACTGTATGTATTTACTACTTAAATTTGGTG 20989 ||||||||||||||||| || |||||||||| | ||||||||| || || |||||||||| Sbjct 332 AACAAAAAGGCCACTCGTGAAAGTGGCCTAAGTTTATGTATTTTCTGCTAAAATTTGGTG 273 Query 20990 GCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGT 21030 ||||||||||||||||||||||||||||||||||||||||| Sbjct 272 GCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGT 232 >seq8333 Length=1724 Score = 87.8 bits (96), Expect = 4e-13 Identities = 190/275 (69%), Gaps = 16/275 (6%) Strand=Plus/Minus Query 15032 TTTGAGAACTACACCCGAACCGCGCAGGTGCTGGCCGACACAATGGCTGAGGCGCACAT- 15090 |||||| ||||||||| ||||| ||||||||||||||||| || || || |||||| | Sbjct 934 TTTGAGCCCTACACCCGCACCGCCCAGGTGCTGGCCGACACCATCGCAGAAGCGCACTTC 875 Query 15091 GTGGGCGGTCGATAAGCCCAT-CACCGCATCGCTCATCCGTGACATTGTCGACGGCATTA 15149 || | |||| |||||||| |||| | ||||| | || ||||| | | | ||| | Sbjct 874 GTCTTC-ATCGACAAGCCCATGCACC-CCTCGCTGGTGCGCGACATGCTGGGCTACATCA 817 Query 15150 ACGCCAAATTCCGCGAGCTGAAATCAA--ATGGCTA---CATCGTGGACGGTGAATGC-T 15203 || | |||||||| ||| |||| ||||| ||||| || | ||||| | Sbjct 816 ACAGCCGCTTCCGCGATCTG--GTCAATGGCGGCTATCTCATCGGGGCC----AATGCGT 763 Query 15204 GGTTCGACGAGGAATCGAACGATAAGGAAACCCTCAAGGCCGGGAAACTGTATATCGACT 15263 |||||| || ||||| |||||| ||| | ||| ||| | ||| || Sbjct 762 ACTTCGACCCCGATCTGAACGGCAAGGAAGACCTGGCCGTCGGCCGCCTGCAGATCAGCT 703 Query 15264 ACGACTATACACCGGTTCCCCCACTGGAAAGCCTG 15298 ||||||| || ||||| || || ||||| | |||| Sbjct 702 ACGACTACACGCCGGTGCCGCCGCTGGAGAACCTG 668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97833894157548