Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq2111 87.8 1e-12 >seq2111 Length=5547 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 101701 ATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATG 101760 ||||||||| || || || | |||||||||||| ||||| || || || || || Sbjct 3415 ATAGATGTGCGCGTCACCAAAAGTATGGATAAAATCTCCCGGTTTTAAATCGCAAACCTG 3356 Query 101761 AGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCAT 101820 ||||||||| | || || | | ||| || |||||||| ||||||||||| || Sbjct 3355 AGCAATCATCAATGTCAATAATGCATAAGATGCTATGTTAAAAGGCACTCCTAAAAAGAT 3296 Query 101821 ATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGA 101878 ||| || ||||||||| | || ||||| | || ||||| |||||||| ||| Sbjct 3295 ATCGGCGCTTCTTTGATATAACTGGCAGGATAATTTGCCATCTGCTACATAAAACTGA 3238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361094730703289