Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001396.1 Length=7308 Score E Sequences producing significant alignments: (Bits) Value seq1025 223 2e-54 seq3009 188 3e-44 >seq1025 Length=9363 Score = 223 bits (246), Expect = 2e-54 Identities = 284/388 (73%), Gaps = 10/388 (3%) Strand=Plus/Plus Query 3651 GCAGTAGTGCACGCGAGTTACTGAAGTGGATTGCGCTTGTCTGCATGACATTCGACCACG 3710 ||||| | ||||||||| | ||||||||||| ||||| | |||||| |||||||| Sbjct 1877 GCAGTGGCGCACGCGAGCTGCTGAAGTGGATCGCGCTGCTGACCATGACCGGCGACCACG 1936 Query 3711 TTGCCAAGGTGTTCTATGACGGCTACGTGCCCGTGTTGTCCGAGCTAGGCCGGATTGCGT 3770 | ||||||||| ||| | |||||||||||| ||| | ||| || || || || |||| Sbjct 1937 TGGCCAAGGTGGTCTTCGGCGGCTACGTGCCGGTGGTCAGCGAACTGGGGCGTATCGCGT 1996 Query 3771 TTCCGCTCTTCGCACTGGTCATGGCCTACAACCTGGCACAGCCTGGAGCTGATGTAGGCA 3830 ||||||| ||||| ||||| ||||||| ||||||||| ||||| || || || | ||| Sbjct 1997 TTCCGCTGTTCGCGCTGGTGATGGCCTGCAACCTGGCCCAGCCCGGGGCCGACCTGCGCA 2056 Query 3831 AGTCGGTCCGCCGGCTGGTGTGCTGGGGGCTGTTGGCGCAACCGTTCCACGCCTGGGCGT 3890 ||||| | |||||||| | | ||||||||| | ||||| || || ||||| |||| Sbjct 2057 AGTCGATACGCCGGCTCGCGCTATGGGGGCTGATCGCGCAGCCATTGCACGCACTCGCGT 2116 Query 3891 TTGGCTACTGGGTGCCCGTGAACGTCCTTCTGGCGTTCGCCCTGGCTGC---TGCCGCTG 3947 | || | |||| |||| | ||| |||| ||| | || ||||||||||| ||||| | Sbjct 2117 TCGGTTCCTGGCTGCCGCTCAACATCCTGCTGACCTTTGCCCTGGCTGCGGTGGCCGC-G 2175 Query 3948 TCTGGGCTATCCAGC--GCGGCCGCTGGGTGCTGCTGATGCTCTGTGCCGCTCCAGCCCC 4005 || ||| | ||| ||||| |||||| ||| |||| ||||| | || Sbjct 2176 CATGCGCTGGCGAGCCATCGGCC----GGTGCTTCTGTTGCTGGCTGCCGGTGTGCTGCC 2231 Query 4006 GTTGTTCGTCGACTACCAATGGACTGGC 4033 | || |||| |||||||| ||| | ||| Sbjct 2232 GATGGTCGTGGACTACCAGTGGGCCGGC 2259 >seq3009 Length=4209 Score = 188 bits (208), Expect = 3e-44 Identities = 280/392 (71%), Gaps = 10/392 (3%) Strand=Plus/Plus Query 3651 GCAGTAGTGCACGCGAGTTACTGAAGTGGATTGCGCTTGTCTGCATGACATTCGACCACG 3710 |||| | || |||||| | |||||||||| ||||| | |||||| |||||||| Sbjct 1197 GCAGCGGCGCGCGCGAGCTGTTGAAGTGGATCGCGCTGCTGGCCATGACCGGCGACCACG 1256 Query 3711 TTGCCAAGGTGTTCTATGACGGCTACGTGCCCGTGTTGTCCGAGCTAGGCCGGATTGCGT 3770 | ||||||||| ||| | ||||||||||| ||| | ||| || || || || || | Sbjct 1257 TGGCCAAGGTGGTCTTCGGGGGCTACGTGCCGGTGGTCAGCGAACTGGGGCGTATCGCCT 1316 Query 3771 TTCCGCTCTTCGCACTGGTCATGGCCTACAACCTGGCACAGCCTGGAGCTGATGTAGGCA 3830 | ||||| ||||| ||||| ||||||| ||||||||| ||||| || || || | ||| Sbjct 1317 TCCCGCTGTTCGCGCTGGTGATGGCCTGCAACCTGGCCCAGCCGGGCGCCGACCTGCGCA 1376 Query 3831 AGTCGGTCCGCCGGCTGGTGTGCTGGGGGCTGTTGGCGCAACCGTTCCACGCCTGGGCGT 3890 | ||| | |||||||| | | ||||||||| | ||||| ||||| ||||| |||| Sbjct 1377 AATCGATGCGCCGGCTCGCGCTATGGGGGCTGATCGCGCAGCCGTTGCACGCACTTGCGT 1436 Query 3891 TTGGCTACTGGGTGCCCGTGAACGTCCTTCTGGCGTTCGCCCTGGC--TGCTGCCGCTGT 3948 | || | |||| |||| | ||| |||| || | ||| ||||||| || || | || Sbjct 1437 TCGGTTCCTGGCTGCCGCTCAACATCCTGCTCACCTTCACCCTGGCGGTGGTGGCCGTGC 1496 Query 3949 CTGGGCTATCCAGC--GCGGCCGCTGGGTGCTGCTGATGCTCTGTGCCGCTCCAGC-CCC 4005 || ||| | | | ||||| ||||||||| |||| ||||| | || || Sbjct 1497 ATGCGCTTGCGAACCATCGGCC----TGTGCTGCTGTTGCTGGCTGCCG-GCGTGCTGCC 1551 Query 4006 GTTGTTCGTCGACTACCAATGGACTGGCATTG 4037 | ||||||| |||||||| ||| | ||| ||| Sbjct 1552 GATGTTCGTGGACTACCAGTGGGCCGGCGTTG 1583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 23261096174112