Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq33741 233 6e-57 >seq33741 Length=260 Score = 233 bits (258), Expect = 6e-57 Identities = 203/252 (81%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 759 GCCGGGCTTCGCTCACTGTTCAGGCCGGAGCCACAGACCGCCGTTGAATGGGCGGATGCT 818 || || || || || || ||| |||| ||||| ||||| || ||||| ||||| || | | Sbjct 8 GCGGGACTCCGTTCGCTTTTCCGGCCCGAGCCGCAGACAGCTGTTGAGTGGGCAGACGAT 67 Query 819 AATTACTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGGGAAACACTGCCCTTT 878 || || || ||||||||||| || || || |||||||||||||||||||| | ||||| Sbjct 68 AACTATTACCTCCCGAAAGAGTCTGCTTATCAGGAAGGGCGCTGGGAAACCTTACCCTTC 127 Query 879 CAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGTGGTGAAG 938 ||||| || ||||||||||| ||||||| |||||| |||||||| || ||||| ||||| Sbjct 128 CAGCGTGCGATCATGAATGCCATGGGCAACGACTATATCCGTGAAGTAAATGTCGTGAAA 187 Query 939 TCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTATAGAGCAT 998 ||||||||||| || || || || |||||||| || || ||||| || || || ||||| Sbjct 188 TCTGCCCGTGTTGGCTACTCAAAGATGCTGCTCGGGGTGTATGCGTATTTCATCCAGCAT 247 Query 999 AAGCAGCGCAAC 1010 |||||||| ||| Sbjct 248 AAGCAGCGAAAC 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155019350240352