Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq7023 163 2e-36 >seq7023 Length=2027 Score = 163 bits (180), Expect = 2e-36 Identities = 219/301 (73%), Gaps = 8/301 (3%) Strand=Plus/Plus Query 2701 CGGTTCATATCCAAATAATCAGCCCACCACTGCATCATTAAACGCCGCTCATCCAAATGC 2760 || ||| ||||| |||||| ||||||||||||| ||| || | ||||| ||| ||| Sbjct 1592 CGATTCGCATCCAGATAATCCGCCCACCACTGCAGCATCAATCTGCGCTCCCCCAGATGT 1651 Query 2761 TCGGAGGTATGGATATATGCCGCACGTACATTATTACGCT-CTGAGTGGCTCAGTTGCCT 2819 || | ||||||| || || || | ||| |||||| |||| ||||||| |||| Sbjct 1652 TCCGCTTTATGGATGTAGGCAGCCCTAACAGAGCTACGCTCCTGA-TGGCTCATCTGCCG 1710 Query 2820 CTCTATCGCGTCATCACT---CCATAACCCCGACTCCCCCAACGCACCACGCGCCATAGT 2876 ||||| || |||| || ||||| ||||| || ||| | | || ||||| || Sbjct 1711 CTCTA---CGGCATCCCTCGACCATAGACCCGATTCAATCAATGAGCTACAGGCCATTGT 1767 Query 2877 CCTAAACCCATGCCCACACACCTCGGTTTTAGTATCATAGCCCATCGCACGCAATGCGCT 2936 ||| || ||||||||||| || || ||||| || |||||||||||| | || | || | Sbjct 1768 CCTGAAACCATGCCCACAGACTTCCGTTTTTGTGTCATAGCCCATCACTCGAAGAGCCTT 1827 Query 2937 GTTTACCGTGTTTTCACTCATAACCTTAGTTGCGTCATGATCCCCCGGAAAAAGCAGCTC 2996 ||| |||||||| ||||||||| |||| | ||| ||||| ||| |||| |||||| Sbjct 1828 GTTCACCGTGTTCTCACTCATAGGCTTACGAGGGTCGTGATCGCCCACGAAAATCAGCTC 1887 Query 2997 T 2997 | Sbjct 1888 T 1888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37066774266448