Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq14623 87.8 2e-12 seq27836 84.2 2e-11 seq32362 82.4 7e-11 >seq14623 Length=969 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || |||||||| ||| ||||||| | || ||||| ||||| || ||| || | Sbjct 31 AAGATGCAAATCTTCGTCAAAACTCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGC 90 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | | || | ||| |||||| ||||| ||||| | ||| || Sbjct 91 TCTGACACCATTGACAATGTAAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCGGAC 150 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 ||||| | || || ||||| || || || ||||||||| | ||| | ||||||||| Sbjct 151 CAACAGCGTCTGATATTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCCTTGCCGATTAC 210 Query 29139 AATATTCAGAAGGAATCTACTCTTCA 29164 ||||| ||||||||||| || || || Sbjct 211 AATATCCAGAAGGAATCCACGCTGCA 236 >seq27836 Length=415 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 29091 ATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAG 29150 |||||||| || || || ||||||||| ||| ||||||||||||||||||||||| Sbjct 87 ATCTTTGCCGGTAAGCAGCTGGAAGATGGTCGTACTCTGGCCGATTACAATATTCAGAAG 146 Query 29151 GAATCTACTCTTCACATGGTG 29171 ||||| || |||||| ||||| Sbjct 147 GAATCGACCCTTCACCTGGTG 167 >seq32362 Length=298 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| || || || || ||||| || ||||| ||||| ||| |||| |||||||| Sbjct 120 GATCAGCAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGAT 179 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGT 29190 || || || |||||||||||||| |||||| | || || || | || || |||| Sbjct 180 TATAACATCCAGAAGGAATCTACACTTCACCTTGTCTTGCGTCTGCGTGGTGGGT 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428150474159045