Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq10726 161 1e-34 seq776 161 1e-34 seq6884 140 4e-28 seq1969 127 2e-24 seq32881 93.3 5e-14 seq10022 82.4 9e-11 >seq10726 Length=1340 Score = 161 bits (178), Expect = 1e-34 Identities = 200/271 (74%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 145710 GTGCGCGTCCCCCAGGACGTGGATGAAGTC-CCCGGGCTCGAGGCCCGTGAGGTGGGCGA 145768 ||||||||| ||||| || | |||||| ||| || | ||||| ||| || || | Sbjct 552 GTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGCCC-AGGCCGGTGGCCTGCGCCA 494 Query 145769 CCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCC 145828 |||||| ||||||||| | ||||||||| |||||||| ||||| || || ||||| | Sbjct 493 CCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGAAGATGTCGC 434 Query 145829 CCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGA 145888 | ||||||||| ||||||||| ||||| ||| || |||||||||||||| ||||| Sbjct 433 CGCTGCGCTGGTAGAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGT 374 Query 145889 GGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGA 145948 |||||| ||| ||| ||||| | || || || |||||||||| ||| || | Sbjct 373 TGTGGCACGGCATCAGCGCCATCTGCGAAAGCTCGCCCACGTTCCAGGCGCTGACCACCA 314 Query 145949 GCCTCCTGCTCTCGGGGTTCCTCTTGATCTC 145979 ||| | |||||||| | ||||||||| Sbjct 313 GCCGGCGCGAATCGGGGTTGCGCTTGATCTC 283 >seq776 Length=11329 Score = 161 bits (178), Expect = 1e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821 ||||| | ||||| ||||||||| | ||||||||| ||||||||||| || ||||| Sbjct 10630 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 10571 Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGG 145881 |||||| | ||||||||| ||||||||| ||||| ||| | ||||||||||||||| Sbjct 10570 ATGTCCGCGCTGCGCTGGTATAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 10511 Query 145882 CACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTG 145941 | | | |||||||||| || ||||| |||||||| ||| |||||||||| || Sbjct 10510 AAGAAGGCGTGGCAGGGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTG 10451 Query 145942 AGGACGAGCCTCCTGCTCTCGGGGTTCCTCTTGATCT 145978 | || || | | ||| || ||||| ||||||| || Sbjct 10450 ACGATGATGCGGCGGCTGTCCGGGTTGCTCTTGAGCT 10414 >seq6884 Length=2068 Score = 140 bits (154), Expect = 4e-28 Identities = 193/270 (71%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 145710 GTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGAC 145769 ||||||||| ||||| ||| | ||| || ||| |||| ||||| || || || Sbjct 1742 GTGCGCGTCGCCCAGCGTGTGCACGAAATCGCCGACGCCGAGACCCGTCGCCTGCGCCAC 1683 Query 145770 CATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCC 145829 ||||| |||||||| | ||||||||| |||||||| ||||| || || ||||| || Sbjct 1682 CATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGAAGATGTCGCC 1623 Query 145830 CGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGGAG 145889 |||||| || ||||||||| ||||| ||| | |||||||||||||| |||| Sbjct 1622 GCTGCGCTGATAGAGCTGGCAGCTGAGCTTGCCGTCGACCACGTAGAACTGGAACAGCGA 1563 Query 145890 GTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAG 145949 ||||| ||| || ||||| ||||| || || |||||||||| ||| || || Sbjct 1562 ATGGCACGGCATCAACGCCATCTTCGGCAGCTCGGCGACGTTCCAGGCGCTGATCACCAG 1503 Query 145950 CCTCCTGCTCTCGGGGTTCCTCTTGATCTC 145979 || | || ||||| | ||||||||| Sbjct 1502 CCGGCGCGAGTCCGGGTTGCGCTTGATCTC 1473 >seq1969 Length=5862 Score = 127 bits (140), Expect = 2e-24 Identities = 301/451 (67%), Gaps = 8/451 (2%) Strand=Plus/Plus Query 145648 GGAAAGGGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAG 145707 ||||| || || || | | |||||||| | || |||||||||||||| | || Sbjct 2114 GGAAATGGACGCGGTGTACGCGTCAGCTGTTGTAAAAGTGGCTCCACGTGGTTCAAATAC 2173 Query 145708 ACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCG 145767 ||||| || || || | || || || || | || || | || || | || || Sbjct 2174 ACGTGTGCATCACCAATTACATGTATAAACTTGCCTGGTTTTAGCCCTACCACTTGCGCT 2233 Query 145768 ACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCC 145827 |||| ||||| || | ||||||||| ||||| || ||||| || || |||||||| Sbjct 2234 ACCAAACGCGTCAGAAGCGCGTAGCTGGCAATGTTAAATGGCACGCCAAGTCCCATGTCG 2293 Query 145828 CCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCCACGTAGAACTGGCACAGG 145887 | || |||||||||| |||||| || ||||| || | || ||||||||||| || | Sbjct 2294 GCTGACCGCTGGTACATCTGGCACGACAGCTCACCATCTGCTACGTAGAACTGACAGAAC 2353 Query 145888 AGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACG 145947 | |||||| || || || ||||| | || || || |||||||| || | || || Sbjct 2354 ATGTGGCACGGTGGTAGCGCCATTTCTTTGAGATCGGCAGGGTTCCAAGCCGAAAGTACA 2413 Query 145948 AGCCTCCTGCTCTC---GGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCC 146004 | ||| || || || ||| | || || |||| || |||||||||| Sbjct 2414 A---TCCGGCGGTCAGTAGGATTCGTACGGAGCTTATGGATCACCTCGGCGAGCTGGTCC 2470 Query 146005 ACGCCCTGCCCCCGGTAATCTGTCTTGGA-GTCCACGTACGCGGCCCCGAAGTGCCTCCA 146063 ||||| || || ||| || | | || | ||| |||| ||| || || || | ||| Sbjct 2471 ACGCCTTGGCCAGTGTAGTC-GGCGTGCATATCCGTGTACTTGGCGCCAAAATGACGCCA 2529 Query 146064 CTGGAACCCGTAGACGGGCCCCAGGTCCCCG 146094 || || || || || || || || |||||| Sbjct 2530 TTGAAAACCATACACCGGTCCAAGATCCCCG 2560 >seq32881 Length=284 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821 || || ||||||| |||||||||| |||||| || |||||||| ||||| ||||| Sbjct 43 TGCGCCACCATGTGCGTCAGCAGGGCGTAGCTCGCAATGTTGAACGGCACGCCCAGAAAG 102 Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGC--TCCCCGCCCGCC 145869 |||||| | |||||||||||||||||| || ||| || |||||||| Sbjct 103 ATGTCCGCACTGCGCTGGTACAGCTGGCACGACAGCGTGCCGCGCCCGCC 152 >seq10022 Length=1431 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 145762 TGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCC 145821 || || ||||||| || ||||||| ||||||||| |||||||| ||||| ||||| Sbjct 481 TGCGCCACCATGTGCGTGAGCAGGGCGTAGCTGGCGATGTTGAACGGCACGCCCAGGAAG 540 Query 145822 ATGTCCCCCGAGCGCTGGTACAGCTGGCAG 145851 ||||| | ||||||||||||||||||| Sbjct 541 ATGTCGGCGCTGCGCTGGTACAGCTGGCAG 570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589814665757560