Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001697.1 Length=32355 Score E Sequences producing significant alignments: (Bits) Value seq29451 111 3e-20 seq2804 104 5e-18 seq782 100 6e-17 seq11422 93.3 9e-15 seq9605 93.3 9e-15 seq14062 91.5 3e-14 seq1494 86.0 1e-12 >seq29451 Length=373 Score = 111 bits (122), Expect = 3e-20 Identities = 72/79 (91%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 ||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 373 TGGTGGGCCGTGAAGGATTCGAACCTTCGACCAAAAGATTAAAAGTCTTCTGCTCTACCG 314 Query 416 ACTGAGCTAACGACCCAAT 434 |||||||||||| ||| || Sbjct 313 ACTGAGCTAACGGCCCGAT 295 >seq2804 Length=4457 Score = 104 bits (114), Expect = 5e-18 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 355 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 414 |||||||||| || ||||||||| |||||||||||||||||||||||||||||||| Sbjct 4224 TTGGTGGGTCCTGCGAGATTCGAACTCGCGACCAACGGATTAAAAGTCCGCTGCTCTACC 4283 Query 415 GACTGAGCTAACGACCC 431 ||||||||||| ||||| Sbjct 4284 GACTGAGCTAAAGACCC 4300 >seq782 Length=11288 Score = 100 bits (110), Expect = 6e-17 Identities = 72/83 (87%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 355 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 414 |||||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct 10258 TTGGTGGGTCGTCCGCGATTCGAACGCGGGACCAACGGATTAAAAGTCCGCTGCTCTACC 10199 Query 415 GACTGAGCTAACGACCCAATTAG 437 ||||||||||||||||| ||| Sbjct 10198 AGCTGAGCTAACGACCCAAATAG 10176 Score = 93.3 bits (102), Expect = 9e-15 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 ||||||||||| || |||||| ||||||||||||||||||||||||||||||| Sbjct 10160 TGGTGGGTCGTCCGCGACTCGAACGCGGGACCAACGGATTAAAAGTCCGCTGCTCTACCA 10101 Query 416 ACTGAGCTAACGACCC 431 |||||||||||||||| Sbjct 10100 ACTGAGCTAACGACCC 10085 >seq11422 Length=1258 Score = 93.3 bits (102), Expect = 9e-15 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand=Plus/Plus Query 345 TTGAATATTATTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCG 404 ||||| || | ||||||||| ||| || |||||| |||||| ||||||||| |||||| Sbjct 1172 TTGAA-ATGAGTGGTGGGTCCTGAGTGACTCGAACACTCGACCTACGGATTAAGAGTCCG 1230 Query 405 CTGCTCTACCGACTGAGCTAACGACCCA 432 |||||||||| |||||||||| ||||| Sbjct 1231 CTGCTCTACCAACTGAGCTAAGAACCCA 1258 >seq9605 Length=1499 Score = 93.3 bits (102), Expect = 9e-15 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 355 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 414 |||||||||| ||| || |||||| |||||| ||||||||| |||||||||||||||| Sbjct 26 TTGGTGGGTCCTGAGTGACTCGAACACTCGACCTACGGATTAAGAGTCCGCTGCTCTACC 85 Query 415 GACTGAGCTAACGACCCAATT 435 |||||||||| ||||| || Sbjct 86 AACTGAGCTAAGAACCCACTT 106 >seq14062 Length=1014 Score = 91.5 bits (100), Expect = 3e-14 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTC-CGCTGCTCTACC 414 |||||||||||| ||||||||||||| ||||||| | ||||||| | |||||||||| Sbjct 223 TGGTGGGTCGTGTAGGATTCGAACCTACGACCAATTGGTTAAAAGCCAAACTGCTCTACC 164 Query 415 GACTGAGCTAACGACCC 431 |||||||||||||||| Sbjct 163 AACTGAGCTAACGACCC 147 >seq1494 Length=7149 Score = 86.0 bits (94), Expect = 1e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 356 TGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACCG 415 |||| || ||| || ||||||| ||||||||||||||||||||||||||||||| Sbjct 2063 TGGTAGGACGTACTGGGGTCGAACCAGTGACCAACGGATTAAAAGTCCGCTGCTCTACCA 2004 Query 416 ACTGAGCTAACGACCCA 432 |||||||||||| |||| Sbjct 2003 ACTGAGCTAACGTCCCA 1987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103370756473206