Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001847.1 Length=135301 Score E Sequences producing significant alignments: (Bits) Value seq4977 91.5 1e-13 >seq4977 Length=2742 Score = 91.5 bits (100), Expect = 1e-13 Identities = 278/423 (66%), Gaps = 29/423 (7%) Strand=Plus/Minus Query 98052 GACAGCGGCGAGGGGTGGCTGTACGTCAGCACGAGGTGCCGCTTCCCGGCCGCCCCAAAG 98111 |||||||||||||||||| || | || ||||| ||||||| |||| | || Sbjct 2090 GACAGCGGCGAGGGGTGGTTGGAGGTGAGCACCAGGTGCCCGCGATCGGCAGGGATGAAC 2031 Query 98112 GCCCG------CTGGGCGTGCGCGCCCCAGAGCATGAACACCAGCGGGCCGCTC-TCCGC 98164 | || ||| ||||||| |||||| ||||||||||||| |||||||||| || | Sbjct 2030 ACGCGCTTGGACTGCGCGTGCGAGCCCCACAGCATGAACACCA-CGGGCCGCTCGCCCTC 1972 Query 98165 GCTCA---GGCGGGCCAGTACCGCGTGCACCAGCCGCCCCCAGCCCAGGCTAGAGTGCGA 98221 | || ||||| | ||| ||| ||| || |||||||| || | ||| Sbjct 1971 GGCCACATGGCGG---ATCACCTCGTCGGTGAGCAGCTCCCAGCCCTTGCCCGCGTGGCT 1915 Query 98222 GCCCGGC-GCCCCGCTCCGCACGGTGAGCGAGGTGTTAAGCAGCAGCACGCCGCGGCGCG 98280 | ||| | | ||| || | ||||||||| |||||| ||||||||||||||| || Sbjct 1914 GGCCGCCTGGCCCTCTTC-CACGGTGAGGCCGGTGTTGAGCAGCAGCACGCCGTTCTTCG 1856 Query 98281 CCCAGTCCTCTAGGCAGCCGTGCGACGGCCGCGGAGCTCCGGGAA----------AGTTC 98330 |||| | | |||| |||| || | || ||| ||||| || || Sbjct 1855 CCCACTTGACCAGGCTGCCGCCCG--GCTCGGGGAAGGTGGGGAACGGCGTATCCAGGTC 1798 Query 98331 -TTCTGCACGGCAGCGTAGATGTTCTGGAGGCTGGGTGGGACCGGAACGCCGCGGTTCAC 98389 ||||| | | ||||||| | || ||| || | | | |||||| | ||| Sbjct 1797 GCGCTGCATCTCTTTGAAGATGTTGCGCAGCGAGGGCGGCAGCTGCACGCCGGGCGCCAC 1738 Query 98390 GCTAAAAGCCAAGCCGTGGGCTTGCCCGCGGCTGTGATAGGGGTCCTGGCCCAGAATGAC 98449 || ||||| || | ||| || ||||||| ||| || |||||||| ||||| ||||| Sbjct 1737 CGAGAACGCCAACCCCTCGGCCTGGCCGCGGCCGTGGTACGGGTCCTGCCCCAGGATGAC 1678 Query 98450 AAC 98452 || Sbjct 1677 CAC 1675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432650924027498