Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq14623 131 1e-25 seq25614 113 4e-20 seq19645 107 2e-18 seq28136 105 6e-18 seq34564 96.9 3e-15 seq20474 96.9 3e-15 seq34320 91.5 1e-13 seq2166 91.5 1e-13 seq32362 89.7 4e-13 seq7414 87.8 2e-12 >seq14623 Length=969 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | ||| || | |||||| || || || || ||||| || ||||| || Sbjct 944 CCACCTCTCAGACGGAGGACAAGATGCAAGGTAGATTCTTTCTGAATATTGTAGTCAGCA 885 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || | || || |||||||| || ||| | || || | ||||||||| ||| Sbjct 884 AGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGG 825 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| ||||| | | ||| || || | |||| | Sbjct 824 ATGCCTTCCTTGTCCTGTATCTTAGCCTTCACATTGTCGATGGTGTCCGAGCTCTCCACT 765 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||||||||| || |||| ||||||||||| || ||||| Sbjct 764 TCCAAAGTAATGGTCTTACCTGTTAGGGTTTTGACAAAGATCTGCAT 718 Score = 109 bits (120), Expect = 5e-19 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| || | ||| || | ||||| ||||| ||||| || || || || || || | Sbjct 257 CCCCTC--AGACGGAGGACAAGATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCAA 200 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 ||||| || | || |||||||| || || ||| | || || | ||| |||||| ||| | Sbjct 199 GGGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAA 140 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 ||||||||| || ||| ||| || || | | | | || ||| | ||| || Sbjct 139 TGCCTTCCTTATCCTGGATTTTTGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGACTT 80 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 | | || |||||||||||||| | |||||||| || |||||||| || || Sbjct 79 CAAGAGTGATGGTCTTGCCGGTAAGAGTTTTGACGAAGATTTGCATCTTCAA 28 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| || | ||||| || || ||||||||||| || ||||| ||||||||| || |||| Sbjct 474 GAGGACGAGATGCAGGGTTGATTCCTTTTGAATATTGTAGTCTGCCAGGGTTCGGCCGTC 415 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 || ||||| || || ||| | || || | |||||||| || | ||||||||||| Sbjct 414 TTCGAGCTGCTTTCCGGCAAATATCAGACGTTGCTGGTCAGGCGGGATTCCTTCCTTGTC 355 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| ||| || | | | | ||||| | ||| ||||| || || || Sbjct 354 CTGGATCTTGGCTTTTACATTGTCAATGGTATCCGAGCTCTCAACTTCCAACGTTATCGT 295 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || || | |||||||| || || ||||| Sbjct 294 CTTACCAGTCAGGGTTTTGACGAAGATCTGCAT 262 >seq25614 Length=477 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||||| || || ||||||||||| || || || |||| ||| | | ||| Sbjct 59 AGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATCAGCCAAGGTCCTGCCATCC 118 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || || | ||||| ||||||||||| ||| | ||||||||||| Sbjct 119 TCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGGGGGAATTCCTTCCTTGTCC 178 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | | || || | ||| ||||| ||||| ||| Sbjct 179 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGCTCTCAACTTCCAATGTAATTGTC 238 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || |||| ||||| ||||| |||||||| Sbjct 239 TTTCCAGTTAGTGTTTTTACAAAGATTTGCAT 270 >seq19645 Length=690 Score = 107 bits (118), Expect = 2e-18 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| ||||||||||| | || | || |||||||| || |||||||||||||| | Sbjct 343 CCCCTC--AGCCTGAGCACGAGGTGGAGGGTCGACTCCTTCTGGATGTTATAGTCCGCGA 286 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 | || || | ||||| ||||| || || || | || || |||||||||||| ||| | Sbjct 285 GTGTGCGGCCATCCTCGAGCTGCTTCCCGGCGAATATCAGCCTCTGCTGGTCCGGGGGAA 226 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 |||||||||||| |||||| || || | | | | || || | |||| | Sbjct 225 TGCCTTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATCGTGTCGGAGCTCTCCACCT 166 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | | || |||||||| ||||| | || || || || || ||||| Sbjct 165 CGAGCGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 120 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | || | || |||||||| || ||||| |||||||| Sbjct 574 CCACCACGGAGACGGAGCACAAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGCA 515 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||| ||||| || || ||| | || || |||||||||||| || Sbjct 514 AGCGTGCGGCCATCCTCGAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGA 455 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||||| || || | ||| || || | |||| Sbjct 454 ATCCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTATCGATCGTGTCGGAGCTCTCCACC 395 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| ||||| | ||| || || || || ||||| Sbjct 394 TCGAGGGTTATGGTCTTCCCGGTCAGCGTCTTCACGAAGATCTGCAT 348 >seq28136 Length=407 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 ||||| || ||||| ||||| | ||||| || ||||| || |||||||| || |||||| Sbjct 238 CCCCCACGAAGCCTCAGCACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATCCGCC 179 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | || |||| ||| ||||||||| | || || | |||||||| || Sbjct 178 AGAGTGCGTCCATCTTCCAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGGCGGG 119 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||| || ||||| | | ||| ||||| | | || | Sbjct 118 ATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCGATTGTATCGCTGCTTTCAACT 59 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| ||||||||||| || | || || || || || ||||| ||| Sbjct 58 TCTAAGGTTATGGTCTTGCCCGTCAGGGTCTTTACGAAGATCTGCATCTTG 8 >seq34564 Length=234 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 20995 TGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCT 21054 |||| |||||||| ||||| ||||||| ||||| || |||||| | ||||| |||| Sbjct 234 TGTTGTAGTCCGCAAGGGTCCTCCCGTCCTCGAGCTGCTTACCCGCAAAGATAAGCCTCT 175 Query 21055 GCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTAT 21114 |||||||| || | ||| |||||||| |||||| ||||| | ||| || | Sbjct 174 GCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTATCGATGGTGT 115 Query 21115 CACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCA 21174 | | |||| || | ||| |||||||| ||||| | || |||||||| || |||| Sbjct 114 CCGAGCTCTCCACCTCGAGGGTGATGGTCTTCCCGGTGAGGGTCTTGACAAAGATCTGCA 55 Query 21175 T 21175 | Sbjct 54 T 54 >seq20474 Length=655 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 20950 CCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCA 21009 |||||| | || ||| |||| || | ||||||||||| || || || ||||| |||| Sbjct 329 CCCCTC--AACCGGAGGACCAGGTGGAGCGTGGACTCCTTCTGGATATTGTAGTCAGCCA 386 Query 21010 GGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCA 21069 ||| || | || || ||||| || || || | || || |||||||||||| ||| | Sbjct 387 AGGTGCGGCCATCTTCAAGCTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGGA 446 Query 21070 CGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTT 21129 || |||||||| |||||| || || | ||| || || | ||| | Sbjct 447 TTCCCTCCTTGTCCTGGATCTTGGACTTTACATTATCGATTGTGTCGGAGCTCTCGACCT 506 Query 21130 CCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAA 21181 | | ||| |||||||||||||| | || || || || |||||||| ||||| Sbjct 507 CAAGGGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAGATTTGCATCTTGAA 558 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| |||||||||||||| |||| ||| || | || || ||||| || || Sbjct 128 GTGGACTCCTTCTGAATGTTATAGTCGGCCAAGGTGCGGCCATCTTCGAGCTGCTTCCCA 187 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTT 21091 ||| | || || ||||||||||| || | || |||||||| |||||| Sbjct 188 GCAAAGATGAGCCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTT 240 >seq34320 Length=242 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 20988 TTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATA 21047 || || ||||| ||||| |||| ||| || | ||||| ||||| ||||| || | || Sbjct 1 TTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATC 60 Query 21048 AGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCG 21107 || |||||||||||| || | |||||||||||| |||||| || || | | || Sbjct 61 AGCCTCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCG 120 Query 21108 ACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAAT 21167 | || || | ||| || | || |||||||||||||| | || ||||| || Sbjct 121 ATGGTGTCGGAGCTCTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAG 180 Query 21168 ATTTGCATTTTGA 21180 || ||||| |||| Sbjct 181 ATCTGCATCTTGA 193 >seq2166 Length=5462 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/193 (72%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 20986 CCTTT-TGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAA 21044 ||||| || ||||| ||||||| || ||| || | ||||| ||||| ||||| ||| || Sbjct 773 CCTTTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAA 832 Query 21045 ATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGG 21104 || || | ||||||||| || | |||||||| || ||| || || || || | | Sbjct 833 ATCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGACATTG 892 Query 21105 CCGA--CAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGA 21162 | | |||| || |||||| |||| || |||||||||||||| | || || | Sbjct 893 TCAATGCAGTCGGAC--GGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCA 950 Query 21163 CAAATATTTGCAT 21175 |||| || ||||| Sbjct 951 CAAAGATCTGCAT 963 >seq32362 Length=298 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| || |||||||| || ||||| ||| | | |||||||||||||| || Sbjct 202 GTAGATTCCTTCTGGATGTTATAATCGGCCAGAGTTCGCCCATCCTCCAGCTGTTTACCA 143 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || |||||||| || || | ||||||||||| || || ||| Sbjct 142 GCAAATATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTGTCCTGAATTTTCGCTTTT 83 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | ||||| | ||| |||| || || |||||||| || ||||| Sbjct 82 ACGTTATCAATCGTATCGGAGCTCTCAACCTCCAGTGTGATAGTCTTGCCTGTCAACGTC 23 Query 21159 TTGACAAATATTTGCAT 21175 || |||||||| ||||| Sbjct 22 TTCACAAATATCTGCAT 6 >seq7414 Length=1926 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20952 CCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGG 21011 || ||||| | ||||| | |||| || |||||||| |||||||| ||||| || Sbjct 1 CCGCGCAGACGAAGCACAAGGTGCAGCGTCGACTCCTTCTGAATGTTGTAGTCGCTCAAC 60 Query 21012 GTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACG 21071 || || | ||||||||||| ||||| || |||| | | ||||||||| || | | Sbjct 61 GTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAAATCAAACGCTGCTGGTCAGGAGGAATG 120 Query 21072 CCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCC 21131 ||||||||||| ||||| ||||| | | ||| | || | ||| || Sbjct 121 CCTTCCTTGTCCTGAATCTTCGTCTTCACGTTGTCGATCGAGTCCGACGACTCGACGTCA 180 Query 21132 ACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 | || || |||||||| || ||||| || || || || ||||| ||| Sbjct 181 AGAGTGATCGTCTTGCCCGTCAACGTCTTCACGAAAATCTGCATCTTG 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422076306212924