Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq8149 230 5e-56 seq1131 201 2e-47 seq8333 150 4e-32 >seq8149 Length=1767 Score = 230 bits (254), Expect = 5e-56 Identities = 368/522 (70%), Gaps = 6/522 (1%) Strand=Plus/Minus Query 18282 GCGCTGGGGCTGCGCGCTAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAAT 18341 || ||||| |||||||| ||||||||||||||||||||||| || ||||||||||| Sbjct 1625 GCCCTGGGCCTGCGCGCGCGCATCGACCAGGAGCAGGGCTGGCACAAGACGCTGTCCAAC 1566 Query 18342 GTCGGGGTGAACGGTGTTACCGGCATCA-GCGC-ATCTGTATTCTGGGATTTGCAGGAGT 18399 || | || || ||| |||||| |||| || || ||| |||| |||| Sbjct 1565 GTGCCGTTGTCGGGCGTTCTGGGCATCTCGCGCGATGTGCATT--GGGACCTGCAAAGCC 1508 Query 18400 CCGGCACCGATGCTGACCTGCTTAACGAGTCAGGCGTCACTACGCTGATTCGCCGCGACG 18459 ||| ||||| || | | | || ||| || | ||| |||| |||||||| | || | | Sbjct 1507 CCGATACCGAGGCCGGCATCCTCAACCAGGCCGGCATCACCACGCTGATCCAGAGCCAGG 1448 Query 18460 GTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACT 18519 | |||||||||||| || |||||| | || | |||||||| ||| || | Sbjct 1447 GCCACCGCTTCTGGGGCTCGCGCACCTGCACGGACAGCGAGCTGTTCCGCTTCGAGTCCA 1388 Query 18520 ACACCCGCACCGCGCAGGTCGTGGCCGACACGATGGCTGAGGCGCACATGTGGGCGGTGG 18579 | |||||||||||||| |||||||||| ||||| |||||||| | ||||| |||| Sbjct 1387 GCGTGCGCACCGCGCAGGTGCTGGCCGACACCATGGCCGAGGCGCATTTCTGGGCCGTGG 1328 Query 18580 ACAAGCCCAT-CACTGCAACGCTGATTCGCGACATCGTTGACGGCATCAATGCCAAATTC 18638 |||||||||| ||| || | ||| | |||||| | || |||||||| |||| ||| Sbjct 1327 ACAAGCCCATGCACCCCAGC-CTGGTCAAGGACATCCTGGAAGGCATCAACACCAAGTTC 1269 Query 18639 CGTGAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTCAGCGAAGAATCC 18698 || || ||||| | ||||| ||| |||| | | ||||| | |||| | Sbjct 1268 CGCGAACTGAAGGCCCTGGGCTACATCCTGGACGGCAAGGCCTGGTACGACGAAACGGTC 1209 Query 18699 AACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTACGACTATACACCGGTG 18758 ||||| | | || ||||||||||| || ||| | ||||||||||| || || ||| Sbjct 1208 AACGAGACCGCCACGCTCAAGGCCGGCAAGCTGGTGCTGGACTACGACTACACGCCCGTG 1149 Query 18759 CCTCCTCTCGAAAACCTGACCCTGCGCCAGCGTATTACCGAT 18800 ||||| || || ||||| | |||||||| || |||||| Sbjct 1148 CCTCCGCTGGAGGACCTGGGTTTTCGCCAGCGCATCACCGAT 1107 >seq1131 Length=8710 Score = 201 bits (222), Expect = 2e-47 Identities = 960/1497 (64%), Gaps = 39/1497 (3%) Strand=Plus/Plus Query 1290 GGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGCTGGCCTC 1349 ||| |||||| ||||||||| || || ||||||| ||| || |||||||||| || Sbjct 3894 GGCATGCATGCACGCCCAGGCCAGATCCGCGTGGCCGGCCTCATCGCTGCGGCCCGCGGT 3953 Query 1350 ATAGGTGGCGCTGCGTCCGCTGC--TG--GTCATGGTCTTGCGGATAGCCATAAACGA-G 1404 |||||| |||| ||||| || |||| ||||||||| |||||||||| | Sbjct 3954 GTAGGTGAT-CTGC---CGCTGGGATGCCGTCAGCACCTTGCGGATGGCCATAAACGCCG 4009 Query 1405 CTGGTGATGTCGGTGGCGCTGACGTCGTATTCCAGACAGCCACGGCGGATAACGTCTTTT 1464 ||| | || ||| | | ||| || | | ||| || ||| || | || Sbjct 4010 CTGCC-ACATCCGTGCACCCGCTGTCCATCTCAAAGCGGCCCTTGCCGATCACCTGCTTG 4068 Query 1465 GCCTTGAGCACCATTGCGGTT-TTCATTTCCGGCGTGTAGCGGATATCACGCGCGGCGGG 1523 ||||| ||||||| |||| | |||| ||| |||| || | ||||| || Sbjct 4069 GCCTTCAGCACCAG-GCGGCTCTTCACCTCCACGCTGTACTGGTAGGCCCGCGCCTGCGG 4127 Query 1524 ATAGAACGAGCGCACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATACCGAT 1583 | ||||| | ||| ||| | ||||| || || ||| ||| || || ||||| Sbjct 4128 AAAGAACTTGATGACGTTCTGATAGACGCCCTGCCCCAGCCCGCTGGTGTCGATGCCGAT 4187 Query 1584 GTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCCGCCTGGGTGGCAAAGTC 1643 ||| |||||| | || | |||| |||||||| || ||||| | ||||| Sbjct 4188 GTAGGTCACGTTGAACTTCTGCGTGATCGCGCGGATGGCCTCTGCCTGCTGCTCGAAGTC 4247 Query 1644 CATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGGCGG 1703 | || || |||| || || | || | | ||| ||||| || | | || |||||| Sbjct 4248 CGCCCCCTTGAACTGCTGCCGGTGCAGCAGCCGGAACTTGCCGCCCGGCGCCCGCGGCGG 4307 Query 1704 TGCCAGTACCACGCATCCGGCGCTG--TCGCCACGGTGTGACGGGTCGTAACCAATCCAT 1761 ||| | ||||| || | | ||| | ||||| ||| || |||||||| || | ||| Sbjct 4308 TGCAATCACCAC-CAGC-GCCGCAGCATCGCCGGTGTGCGATGGGTCGTACCCCACCCAC 4365 Query 1762 ACCGGGCGGGAGCCGAACGGATTGGCGGCAAACGGCGCATAGTCTTCCCATTCTTCC-AG 1820 ||||| | || |||| | |||||||||| | || |||| | ||| || Sbjct 4366 ACCGGAAAGTGCGCGTACGGCCGCGTGGCAAACGGCTTGCAATCCGCCCACGCCTCCCAG 4425 Query 1821 CGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGATGCCTTGTCGTCAAC 1880 | |||| |||||||||| |||| |||| || || ||||| || ||||||| | Sbjct 4426 C-TGTCCACCATGCAGCCCTGCATTTCCTTGAGCGTGAACAGGCTAGCGCTGTCGTCGAT 4484 Query 1881 AAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTGAGCTGCTC 1940 || || |||||| ||||||| || || || | |||| |||| |||| || Sbjct 4485 GAACTCGCACATGTACAGGTTGGCGAACTCTTCCGGGCTGCTTTCTTCCCGCAGCTCGTC 4544 Query 1941 AATGTCGAACAGCGTGCAGCC--GCCTTTCAGGGCGTCCTCAATGGTGACAATCTGTCGC 1998 ||||||||||| ||||||| | | | | | ||||||| || || || | | ||| Sbjct 4545 GATGTCGAACAGGTTGCAGCCCAGGCGTGCCG--CGTCCTCGATCGTCACCACGTCGCGC 4602 Query 1999 CACTGGCCGTCCGCACAGAGAAGCCCACCGGCAAGGGCGTTATGACTGACGTCGATTTCC 2058 |||| || || || | | | | || ||| || || || || |||||||| Sbjct 4603 CACTTGCGATCGGCCCCGCGGATGCCGCCGCGCAGCGCTGCGTGGCTCACGTCGATGGTG 4662 Query 2059 ACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTAAACAGTTCACCCGACCAGAACGGGTAG 2118 | | ||| | |||| || || ||| | || ||||||||| || Sbjct 4663 ATGGCCTCGCCCTTGCTG---CGGCCTTTGTTGCGCTCCGTGCCGTTCCAGAACGGATAC 4719 Query 2119 GCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTCTGTGAG 2178 || || |||| || | |||||||||||||| || ||| |||| || | || | Sbjct 4720 GCCTCATGCGACATGGCCGACGGGGTGGAGAAGTACGTCTTGCGCCAATGCTTGTGCGTC 4779 Query 2179 GCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGGATCCAGAAAATCTCATCG 2238 ||||| | | |||||||| || |||| || | ||| || | ||||||| Sbjct 4780 GCCATGGCCGCGGCCACCTTGTTGAGCTGGCGAAAGCCCGACACCCAAAAGAACTCATCG 4839 Query 2239 ACGTACAGGTCGCCGTTATGACTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAAATCAGT 2298 | ||| | ||||||| | | | |||||| || || | |||||||| | ||| ||| Sbjct 4840 AAGTAGAAGTCGCCGCTGCGCCCCTGCGCCGTCTTCGCATTGGTGCCCAAAAAGTGCAGC 4899 Query 2299 TTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAACCAGACGG 2358 | || ||| || ||| || || ||||| ||| |||| || ||| | ||||| | | Sbjct 4900 TCCGCACCG---TTCGACAGCACGATAGGGTCGCCGCTCAGCTCCACGCCCACCAGCCCG 4956 Query 2359 GCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGTGTTTTACTGGCCGACAGAAAA 2418 |||||||| | ||||| |||| | |||||| | || || || || ||| Sbjct 4957 GCAAAGGCCAGCATGTACGTCTTGAACTGGTGCGCCTGCGCCTTTGATGCAGAAAGGAAA 5016 Query 2419 ATCTGGTTATGACCGGTTTTCAGGGCACGCAGCAGCGCCTCGCGGGAAAAATAAAACGTC 2478 ||||| || | || | | ||| || | |||||||||||||| ||| || | || Sbjct 5017 ATCTGATTGCGCCCCTCCGTGATGGCGCGTATCAGCGCCTCGCGGGCAAAGTACCAAGTG 5076 Query 2479 GCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAAGCCCGGCACGATAC 2538 || || ||||| || || ||||| | || |||| | | || | | | || Sbjct 5077 GCCCCGATCTGCCGCGACTTCAGCAGCAGCCGCGTGCGCTCCGTCTGCGCCTCCC---AC 5133 Query 2539 CAGTGCAGCTG-ATAGTCGAAAGACTGCTCAAAGAAAATCTGCTCCAGCTTTTCGATGGC 2597 || | | || | ||| | || |||||| ||| |||| | |||||| ||||| Sbjct 5134 CACTTC-GCGGCATACCCAAAGTTCTGCTCGTGGAAGATCTCCAGCAGCTTCTCGATCTG 5192 Query 2598 CTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGC-CGTCCGCCTTTGTTACGGTTAGCGA 2656 ||| || |||| || ||||| ||||| | |||| ||| || || | Sbjct 5193 CTCTTCGGTGAAGTGGTTGCGCTTCGGCGTGCGCTTGGGCGCC-GCGTTGCGCGCGGCAA 5251 Query 2657 CGTTCGGATTAAGGTCTGCCTCGTTGCCGGT-CTGGCT-GTAGCGGTTGACCCGTGCCAG 2714 ||| || || | ||| | || ||||| || || || |||||| | || || ||| Sbjct 5252 TGTTGGGGTTCAAGTCGCCTTCCTTGCCCGTGCT--CTGGTAGCGCTCCACGCGCGCCGT 5309 Query 2715 TCGTTCAATCTGGCGTCCCAGCAGGTCAATTTCCTTGAAGTCACCGCCGGTTTTCTG 2771 || || | ||| || ||||||||||| || ||||||||||| ||||| || ||||| Sbjct 5310 GCGCTCCAGCTGCCGGCCCAGCAGGTCGATCTCCTTGAAGTCGCCGCCCGTCTTCTG 5366 Score = 100 bits (110), Expect = 6e-17 Identities = 111/147 (76%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 3449 ATCGCGATGAACAAGGCCGCGCAGAAGGTCTACACCTCAATGGAAATTCAGCCGAACTTT 3508 |||| | |||||||||||| |||||| |||||||||| || || || | || | || Sbjct 6146 ATCGAGCTGAACAAGGCCGGCCAGAAGCTCTACACCTCCATCGAGATCAACCCCGAATTC 6205 Query 3509 GCCAACACCGGCAAATGTTATCTGGTGGGTCTGGCCGTCACCGATGACCCGGCAAGCCTC 3568 ||| |||||||| | || || ||||| |||||||||||||| |||| || ||||| Sbjct 6206 GCCGACACCGGCGAGGCGTACCTCGTGGGCCTGGCCGTCACCGACAACCCCGCCAGCCTG 6265 Query 3569 GGCACGGAATACCTGGAATTCTGCCGC 3595 ||||| || ||||| ||| ||||| Sbjct 6266 GGCACCGAGGCGCTGGAGTTC-GCCGC 6291 Score = 80.6 bits (88), Expect = 6e-11 Identities = 227/344 (66%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 4740 CTGATTGAACCGTGGTATCAGGAAGACCCTGACCTTGTGGTGATTGTGGGGCGTCAGCTA 4799 ||| | || |||||||| || | ||||| ||||| || | || | || || ||| Sbjct 7408 CTGCTCGACCCGTGGTACCACGGCGACCCCGACCTCGTCGCCATCCTCGGCCGCGGGCTC 7467 Query 4800 CTGGCGGACAAGTATTTCCCCATCGTCAACAAGGAGCAGGACAACAGCGAAATGCTGGCC 4859 || ||||||| ||||| | |||||| | |||||| | || ||||| ||| ||| Sbjct 7468 ATGCATGACAAGTTCTTCCCGCTGGTCAACCAAGAGCAGCCCGCCACCGAAACGCTCGCC 7527 Query 4860 GCTGACGTCATCATCAGCCAGAAACGCATCGGTAACCTACCAGCGGTACGCGTCCCGTAC 4919 | || | ||||| || || ||| | || ||| | || || ||| || | | Sbjct 7528 ACCGATCTGGTCATCTCGCAAAAGCGCGTAGGCGGCCTGCGCGCCGTCACCGTGCCCTTC 7587 Query 4920 TTCCCGGCGGATGCGA--TGCTCATCACGAAGCTGGAAAACCTGTCCATCTACT---ACA 4974 ||||| || | || | ||||| |||| | |||| |||||||||||||||| | | Sbjct 7588 TTCCC--CGAAGGCAAGGTGCTCGTCACCACGCTGTCCAACCTGTCCATCTACTGGCAGA 7645 Query 4975 TGGATGACAGCCATCGCCGCGTGATTGAGGAAAACCCGAAACTCGACCGCGTGGAGAACT 5034 | | | ||| |||| ||||| |||| || | |||| ||| |||||| Sbjct 7646 TCGCCGCGCGCCGCCGCCACGTGA---AGGACGCGCCCGAGGTCGATGCGGTGCAGAACT 7702 Query 5035 ACGAGTCAATGAACATTGATTACGTGGTGGAAGACTAC-GCCGC 5077 |||||| ||| || |||||||| ||||||||| ||||| Sbjct 7703 TCGAGTCGTCCAACGACGACTACGTGGTCGAAGACTACGGCCGC 7746 >seq8333 Length=1724 Score = 150 bits (166), Expect = 4e-32 Identities = 465/702 (66%), Gaps = 48/702 (7%) Strand=Plus/Minus Query 17945 CGCGCAGACCGTTTCCAATATCATCGGCACCACCGATGAAAACGGTCAGTACACCGGACT 18004 |||| | |||| |||| |||||||||||||| || ||| ||| |||||| || Sbjct 1517 CGCGGAAACCGCAACCAACGTCATCGGCACCACCACCGAGGCCGGCCAGCGCACCGGCCT 1458 Query 18005 AAAAGCCATGCTGGCGGCGGAGTCGGTAACCGGTGTTAAACCGCGTATTCTCGGCGTGCC 18064 | ||| |||||||||| ||| | | || || || ||||| || |||||| ||| Sbjct 1457 GCAGGCCCTGCTGGCGGCCGAGGGGCAATTGGGCGTGAAGCCGCGCATCATCGGCGCGCC 1398 Query 18065 GGGACTGGATACCAAAGAGGTGGCTGTTGCACTGGCATCAGTCTGTCAGAAGCTGCGTGC 18124 || ||||| ||||| | ||||| || || |||| || || ||| |||| || || Sbjct 1397 CGGCCTGGACACCAAGGCCGTGGCCGTGGCCATGGCGTCCGTGGCGCAGCAGCTCCGCGC 1338 Query 18125 TTTCGGGTA--TATCAGCGCATGGGGCTGTAAAACCAT-----TTCCG------AGGTGA 18171 ||| || | || || | || || ||| || | ||| ||| Sbjct 1337 CTTCACCTACGTTTCGGCCCGCGGCGCC----AACGATGCCTATGCCGCCACCAAGG--- 1285 Query 18172 AAGCC---------TATCGTCAGAATTTCAGCCAGCGTGAGCTGATGGTCATCTGGCCGG 18222 ||||| || || | ||| | ||||| ||| ||||||| || ||||| Sbjct 1284 AAGCCGCCGTGCTCTACCGCGGCGAGTTCGGGCAGCGCGAGGTGATGGTGATGTGGCCCA 1225 Query 18223 ATTTCCTCGCATGGGATACGGTCACCAGTACCA--CCGCCACCGCGTATGCCACCGCCCG 18280 | ||||| || ||||| ||| | | | | ||| | | ||| |||| Sbjct 1224 ACTTCCTGGCCTGGGA--CGGCGAGGCGGGCGAGGCCGTGGAGGTGCCCGCCGTCGCCTA 1167 Query 18281 TGCGCTGGGGCTGCGCGCTAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAA 18340 ||| ||||| |||||||| || | || |||||| |||||||| || | | ||||| Sbjct 1166 TGCCCTGGGCCTGCGCGCCAAGCTGGATCAGGAGATTGGCTGGCACAAGTCCATTTCCAA 1107 Query 18341 TGTCGGGGTGAACGGTGTTACCGGCATCA-GCGCATCTGTATTCTGGGATTTGCAGGAGT 18399 | | ||| ||||| || ||||||| |||| ||| |||| || ||||| || Sbjct 1106 CATGGTGGTCAACGGCGTGGAAGGCATCACGCGCGA-TGTGTTCTTCGACCTGCAG-AGC 1049 Query 18400 CCGGC-ACCGATGCTGACCTGCTTAACGAGTCAGGC-GTCACTACGCTGATTCGCCGCGA 18457 ||||| | |||||| | | || ||| || ||| ||||| ||||||||||| ||||| Sbjct 1048 CCGGCCAGCGATGCGGGCTACCTGAAC-AGCAAGGAAGTCACCACGCTGATTCGGCGCGA 990 Query 18458 CGGTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTG----TTCCTCTTTG 18513 ||| | ||||||||||||| || |||||| | | || || | ||| ||||| Sbjct 989 CGGATACCGCTTCTGGGGTTCGCGCACCTGCGAGGCCG-CCGGCGGAAAGTTCGCCTTTG 931 Query 18514 AAAACTACACCCGCACCGCGCAGGTCGTGGCCGACACGATGGCTGAGGCGCACAT-GTGG 18572 | ||||||||||||||| ||||| |||||||||| || || || |||||| | || Sbjct 930 AGCCCTACACCCGCACCGCCCAGGTGCTGGCCGACACCATCGCAGAAGCGCACTTCGTCT 871 Query 18573 GCGGTGGACAAGCCCAT-CACTGCAACGCTGATTCGCGACAT 18613 | | ||||||||||| ||| | ||||| | |||||||| Sbjct 870 TC-ATCGACAAGCCCATGCAC-CCCTCGCTGGTGCGCGACAT 831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107330684576490