Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq33741 170 6e-38 seq12243 105 2e-18 >seq33741 Length=260 Score = 170 bits (188), Expect = 6e-38 Identities = 181/239 (76%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 627 TCACTATACCGCCCGGAACCCATGACAGCTGTCGAATGGGCCGATGCGCATTATTACCTT 686 || || | ||| || || || ||||||||| || ||||| || | | |||||||| Sbjct 20 TCGCTTTTCCGGCCCGAGCCGCAGACAGCTGTTGAGTGGGCAGACGATAACTATTACCTC 79 Query 687 CCGAAAGAATCCGCTTATCAGGAGGGTCGCTGGGAAACACTGCCATTTCAGCGCGCGATC 746 |||||||| || ||||||||||| || ||||||||||| | || || ||||| |||||| Sbjct 80 CCGAAAGAGTCTGCTTATCAGGAAGGGCGCTGGGAAACCTTACCCTTCCAGCGTGCGATC 139 Query 747 ATGAATGCGATGGGCAGTGACTATATTCGCATTGTTAACGTCATTAAGTCGGCGCGAGTA 806 |||||||| ||||||| |||||||| || || || ||| | || || || || || Sbjct 140 ATGAATGCCATGGGCAACGACTATATCCGTGAAGTAAATGTCGTGAAATCTGCCCGTGTT 199 Query 807 GGCTATTCGAAAATGCTCCTCGGCGTCATTGCTTATTTCATCGAGCACAAACAGCGTAA 865 ||||| || || ||||| ||||| || ||| ||||||||| |||| || ||||| || Sbjct 200 GGCTACTCAAAGATGCTGCTCGGGGTGTATGCGTATTTCATCCAGCATAAGCAGCGAAA 258 >seq12243 Length=1175 Score = 105 bits (116), Expect = 2e-18 Identities = 159/224 (71%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 13981 ATGCGCCAGAAAACCATTGATGCCATCATGGCGCACGCCGCTGCGGAATATCCGCGCGAG 14040 |||| | || |||| | | |||||| ||||||||||| || || || |||||||| Sbjct 346 ATGCAACCGACAACCCTGCAGGCCATCCAGGCGCACGCCGTGGCCGAGTACCCGCGCGAA 405 Query 14041 TGCTGCGGCGTGGTAGCG--CAGAAAAGCCGGGTTGAGCGCTATTTCCCCTGCCGCAACC 14098 |||||||| || | | | || ||| | || |||||| | |||||||||||| Sbjct 406 TGCTGCGGGCTGATCGTGGCCATTGAAGGCCAC--GAACGCTATCTTCCCTGCCGCAACG 463 Query 14099 TCTCAGCCGAGCCGACAGAGCATTTTCACCTTTCTCCTGAAGACTACGCAGCTGCCGAGG 14158 | | ||| ||| | |||||||| | || | |||||||||| || | |||||||| Sbjct 464 TGGCCGCCACGCCCAGCGAGCATTTCCGTCTGCCGGCTGAAGACTATGCCGTTGCCGAGG 523 Query 14159 ACTGGGGGACGGTGGTGGCCATTGTTCACAGCCACCCTGACGCC 14202 || ||| |||| ||||| | || |||||||| || |||||| Sbjct 524 ACAAGGGCGAGGTGCTGGCCCTGGTGCACAGCCATCCCGACGCC 567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148215822715566